R
R. L. Colasanti
Researcher at Argonne National Laboratory
Publications - 23
Citations - 1636
R. L. Colasanti is an academic researcher from Argonne National Laboratory. The author has contributed to research in topics: Spirometry & Biofilm. The author has an hindex of 14, co-authored 22 publications receiving 1299 citations. Previous affiliations of R. L. Colasanti include University of South Wales & University of Chicago.
Papers
More filters
Journal ArticleDOI
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Adam P. Arkin,Adam P. Arkin,Robert W. Cottingham,Christopher S. Henry,Nomi L. Harris,Rick Stevens,Sergei Maslov,Paramvir S. Dehal,Doreen Ware,Fernando Perez,Shane Canon,Michael W. Sneddon,Matthew L. Henderson,William J. Riehl,Dan Murphy-Olson,Stephen Y. Chan,Roy T. Kamimura,Sunita Kumari,Meghan M Drake,Thomas Brettin,Elizabeth M. Glass,Dylan Chivian,Dan Gunter,David J. Weston,Benjamin H. Allen,Jason K. Baumohl,Aaron A. Best,Benjamin P. Bowen,Steven E. Brenner,Christopher Bun,John-Marc Chandonia,Jer Ming Chia,R. L. Colasanti,Neal Conrad,James J. Davis,Brian H. Davison,Matthew DeJongh,Scott Devoid,Emily M. Dietrich,Inna Dubchak,Janaka N. Edirisinghe,Janaka N. Edirisinghe,Gang Fang,José P. Faria,Paul M. Frybarger,Wolfgang Gerlach,Mark Gerstein,Annette Greiner,James Gurtowski,Holly L. Haun,Fei He,Rashmi Jain,Rashmi Jain,Marcin P. Joachimiak,Kevin P. Keegan,Shinnosuke Kondo,Vivek Kumar,Miriam Land,Folker Meyer,Mark Mills,Pavel S. Novichkov,Taeyun Oh,Taeyun Oh,Gary J. Olsen,Robert Olson,Bruce Parrello,Shiran Pasternak,Erik Pearson,Sarah S. Poon,Gavin Price,Srividya Ramakrishnan,Priya Ranjan,Priya Ranjan,Pamela C. Ronald,Pamela C. Ronald,Michael C. Schatz,Samuel M. D. Seaver,Maulik Shukla,Roman A. Sutormin,Mustafa H Syed,James Thomason,Nathan L. Tintle,Daifeng Wang,Fangfang Xia,Hyunseung Yoo,Shinjae Yoo,Dantong Yu +86 more
TL;DR: Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Olson, Dan; Chan, Stephen Y; Kamimura, Roy T.
Journal ArticleDOI
A unifying hypothesis for the structure of microbial biofilms based on cellular automaton models
TL;DR: Experimental research with bacterial colonies and models of the latter using cellular automata give results which strongly suggest that biofilm structure is largely determined by substrate concentration.
Journal ArticleDOI
Resource dynamics and vegetation processes: a deterministic model using two-dimensional cellular automata.
R. L. Colasanti,J. P. Grime +1 more
TL;DR: Rules of resource capture, utilization and release derived from CSR theory have been used to construct a cellular automaton model simulating secondary succession and spatial patterns of vegetation development on gradients in resource concentration and intensity of disturbance.
Posted ContentDOI
The DOE Systems Biology Knowledgebase (KBase)
Adam P. Arkin,Rick Stevens,Robert W. Cottingham,Sergei Maslov,Christopher S. Henry,Paramvir S. Dehal,Doreen Ware,Fernando Perez,Nomi L. Harris,Shane Canon,Michael W. Sneddon,Matthew L. Henderson,William J. Riehl,Dan Gunter,Dan Murphy-Olson,Stephen Y. Chan,Roy T. Kamimura,Thomas Brettin,Folker Meyer,Dylan Chivian,David J. Weston,Elizabeth M. Glass,Brian H. Davison,Sunita Kumari,Benjamin H. Allen,Jason K. Baumohl,Aaron A. Best,Benjamin P. Bowen,Steven E. Brenner,Christopher Bun,John-Marc Chandonia,Jer Ming Chia,R. L. Colasanti,Neal Conrad,James J. Davis,Matthew DeJongh,Scott Devoid,Emily M. Dietrich,Meghan M Drake,Inna Dubchak,Janaka N. Edirisinghe,Gang Fang,José P. Faria,Paul M. Frybarger,Wolfgang Gerlach,Mark Gerstein,James Gurtowski,Holly L. Haun,Fei He,Rashmi Jain,Marcin P. Joachimiak,Kevin P. Keegan,Shinnosuke Kondo,Kumar,Miriam Land,Mark Mills,Pavel S. Novichkov,Taeyun Oh,Gary J. Olsen,Olson B,Bruce Parrello,Shiran Pasternak,Erik Pearson,Sarah S. Poon,Gavin Price,Srividya Ramakrishnan,Priya Ranjan,Pamela C. Ronald,Michael C. Schatz,Seaver Smd,Maulik Shukla,Roman A. Sutormin,Mustafa H Syed,James Thomason,Nathan L. Tintle,Daifeng Wang,Fangfang Xia,Hyunseung Yoo,Shinjae Yoo +78 more
TL;DR: The KBase platform has extensible analytical capabilities that currently include genome assembly, annotation, ontology assignment, comparative genomics, transcriptomics, and metabolic modeling, and a software development kit allowing the community to add functionality to the system.
Patent
Method and system for interpreting and validating experimental data with automated reasoning
TL;DR: In this article, a semantic representation of domain specific knowledge is created that meets a desired set of criteria and a set of reasons are used to help interpret the classified pharmaceutical data to remove errors such as "physical errors" (e.g., pipettor errors, common microplate preparation errors, microplate variances within runs, bio-chip errors, gel-electrophoresis errors, etc.).