R
Rashmi Jain
Researcher at University of California, Davis
Publications - 54
Citations - 1542
Rashmi Jain is an academic researcher from University of California, Davis. The author has contributed to research in topics: Gene & Mutant. The author has an hindex of 13, co-authored 45 publications receiving 972 citations. Previous affiliations of Rashmi Jain include Lawrence Berkeley National Laboratory & Stevens Institute of Technology.
Papers
More filters
Journal ArticleDOI
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Adam P. Arkin,Adam P. Arkin,Robert W. Cottingham,Christopher S. Henry,Nomi L. Harris,Rick Stevens,Sergei Maslov,Paramvir S. Dehal,Doreen Ware,Fernando Perez,Shane Canon,Michael W. Sneddon,Matthew L. Henderson,William J. Riehl,Dan Murphy-Olson,Stephen Y. Chan,Roy T. Kamimura,Sunita Kumari,Meghan M Drake,Thomas Brettin,Elizabeth M. Glass,Dylan Chivian,Dan Gunter,David J. Weston,Benjamin H. Allen,Jason K. Baumohl,Aaron A. Best,Benjamin P. Bowen,Steven E. Brenner,Christopher Bun,John-Marc Chandonia,Jer Ming Chia,R. L. Colasanti,Neal Conrad,James J. Davis,Brian H. Davison,Matthew DeJongh,Scott Devoid,Emily M. Dietrich,Inna Dubchak,Janaka N. Edirisinghe,Janaka N. Edirisinghe,Gang Fang,José P. Faria,Paul M. Frybarger,Wolfgang Gerlach,Mark Gerstein,Annette Greiner,James Gurtowski,Holly L. Haun,Fei He,Rashmi Jain,Rashmi Jain,Marcin P. Joachimiak,Kevin P. Keegan,Shinnosuke Kondo,Vivek Kumar,Miriam Land,Folker Meyer,Mark Mills,Pavel S. Novichkov,Taeyun Oh,Taeyun Oh,Gary J. Olsen,Robert Olson,Bruce Parrello,Shiran Pasternak,Erik Pearson,Sarah S. Poon,Gavin Price,Srividya Ramakrishnan,Priya Ranjan,Priya Ranjan,Pamela C. Ronald,Pamela C. Ronald,Michael C. Schatz,Samuel M. D. Seaver,Maulik Shukla,Roman A. Sutormin,Mustafa H Syed,James Thomason,Nathan L. Tintle,Daifeng Wang,Fangfang Xia,Hyunseung Yoo,Shinjae Yoo,Dantong Yu +86 more
TL;DR: Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Olson, Dan; Chan, Stephen Y; Kamimura, Roy T.
Journal ArticleDOI
Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9
Oliver Xiaoou Dong,Shu Yu,Rashmi Jain,Nan Zhang,Phat Q. Duong,Corinne Butler,Yan Li,Anna Lipzen,Joel Martin,Kerrie Barry,Jeremy Schmutz,Li Tian,Pamela C. Ronald,Pamela C. Ronald,Pamela C. Ronald +14 more
TL;DR: These results demonstrate targeted gene insertion of marker-free DNA in rice using CRISPR-Cas9 genome editing, and offer a promising strategy for genetic improvement of rice and other crops.
Journal ArticleDOI
The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Guotian Li,Guotian Li,Rashmi Jain,Rashmi Jain,Mawsheng Chern,Mawsheng Chern,Nikki T Pham,Nikki T Pham,Joel Martin,Tong Wei,Tong Wei,Wendy Schackwitz,Anna Lipzen,Phat Q. Duong,Kyle C Jones,Kyle C Jones,Liangrong Jiang,Liangrong Jiang,Deling Ruan,Deling Ruan,Diane Bauer,Yi Peng,Kerrie Barry,Jeremy Schmutz,Pamela C. Ronald,Pamela C. Ronald +25 more
TL;DR: This work demonstrates how inexpensive next-generation sequencing can be applied to generate a high-density catalog of mutations and reveals the usefulness of the resource for efficient, cost-effective identification of genes conferring specific phenotypes.
Posted ContentDOI
The DOE Systems Biology Knowledgebase (KBase)
Adam P. Arkin,Rick Stevens,Robert W. Cottingham,Sergei Maslov,Christopher S. Henry,Paramvir S. Dehal,Doreen Ware,Fernando Perez,Nomi L. Harris,Shane Canon,Michael W. Sneddon,Matthew L. Henderson,William J. Riehl,Dan Gunter,Dan Murphy-Olson,Stephen Y. Chan,Roy T. Kamimura,Thomas Brettin,Folker Meyer,Dylan Chivian,David J. Weston,Elizabeth M. Glass,Brian H. Davison,Sunita Kumari,Benjamin H. Allen,Jason K. Baumohl,Aaron A. Best,Benjamin P. Bowen,Steven E. Brenner,Christopher Bun,John-Marc Chandonia,Jer Ming Chia,R. L. Colasanti,Neal Conrad,James J. Davis,Matthew DeJongh,Scott Devoid,Emily M. Dietrich,Meghan M Drake,Inna Dubchak,Janaka N. Edirisinghe,Gang Fang,José P. Faria,Paul M. Frybarger,Wolfgang Gerlach,Mark Gerstein,James Gurtowski,Holly L. Haun,Fei He,Rashmi Jain,Marcin P. Joachimiak,Kevin P. Keegan,Shinnosuke Kondo,Kumar,Miriam Land,Mark Mills,Pavel S. Novichkov,Taeyun Oh,Gary J. Olsen,Olson B,Bruce Parrello,Shiran Pasternak,Erik Pearson,Sarah S. Poon,Gavin Price,Srividya Ramakrishnan,Priya Ranjan,Pamela C. Ronald,Michael C. Schatz,Seaver Smd,Maulik Shukla,Roman A. Sutormin,Mustafa H Syed,James Thomason,Nathan L. Tintle,Daifeng Wang,Fangfang Xia,Hyunseung Yoo,Shinjae Yoo +78 more
TL;DR: The KBase platform has extensible analytical capabilities that currently include genome assembly, annotation, ontology assignment, comparative genomics, transcriptomics, and metabolic modeling, and a software development kit allowing the community to add functionality to the system.
Journal ArticleDOI
A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
Mawsheng Chern,Qiufang Xu,Qiufang Xu,Rebecca Bart,Rebecca Bart,Wei Bai,Wei Bai,Deling Ruan,Deling Ruan,Wing Hoi Sze-To,Wing Hoi Sze-To,Patrick E. Canlas,Patrick E. Canlas,Rashmi Jain,Rashmi Jain,Xuewei Chen,Xuewei Chen,Xuewei Chen,Pamela C. Ronald,Pamela C. Ronald +19 more
TL;DR: The identification of a rice mutant, snim1, which suppresses NH1-mediated immunity and it is demonstrated that two genes encoding previously uncharacterized cysteine-rich-receptor-like kinases (CRK6 and CRK10), complement thesnim1 mutant phenotype.