R
Richard Liwski
Researcher at Critical Path Institute
Publications - 7
Citations - 438
Richard Liwski is an academic researcher from Critical Path Institute. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 3, co-authored 4 publications receiving 340 citations.
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Journal ArticleDOI
A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis
Paolo Miotto,Belay Tessema,Elisa Tagliani,Leonid Chindelevitch,Angela M. Starks,Claudia Emerson,Debra Hanna,Peter S. Kim,Richard Liwski,Matteo Zignol,Christopher Gilpin,Stefan Niemann,Claudia M. Denkinger,Joy Fleming,Robin M. Warren,Derrick W. Crook,Derrick W. Crook,James E. Posey,Sebastien Gagneux,Sebastien Gagneux,Sven Hoffner,Sven Hoffner,Camilla Rodrigues,Iñaki Comas,David M. Engelthaler,Megan Murray,David Alland,Leen Rigouts,Christoph Lange,Keertan Dheda,Rumina Hasan,Uma Devi Ranganathan,Ruth McNerney,Matthew Ezewudo,Daniela Maria Cirillo,Marco Schito,Claudio U. Köser,Timothy C. Rodwell,Timothy C. Rodwell +38 more
TL;DR: This study provides a standardised and comprehensive approach for the interpretation of mutations as predictors of M. tuberculosis drug- resistant phenotypes and has implications for the clinical interpretation of molecular diagnostics and next-generation sequencing as well as efficient individualised therapy for patients with drug-resistant tuberculosis.
Journal ArticleDOI
Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform
Angela M. Starks,Enrique Aviles,Daniela Maria Cirillo,Claudia M. Denkinger,David L. Dolinger,Claudia Emerson,Jim Gallarda,Debra Hanna,Peter S. Kim,Richard Liwski,Paolo Miotto,Marco Schito,Matteo Zignol +12 more
TL;DR: A global partnership of academic institutions, public health agencies, and nongovernmental organizations has been established to develop a tuberculosis relational sequencing data platform (ReSeqTB) that seeks to increase understanding of the genetic basis of resistance by correlating molecular data with results from drug susceptibility testing and, optimally, associated patient outcomes.
Journal ArticleDOI
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase
Matthew Ezewudo,Amanda Borens,Álvaro Chiner-Oms,Paolo Miotto,Leonid Chindelevitch,Angela M. Starks,Debra Hanna,Richard Liwski,Matteo Zignol,Christopher Gilpin,Stefan Niemann,Thomas Kohl,Robin M. Warren,Derrick W. Crook,Sebastien Gagneux,Sven Hoffner,Camilla Rodrigues,Iñaki Comas,David M. Engelthaler,David Alland,Leen Rigouts,Christoph Lange,Keertan Dheda,Rumina Hasan,Ruth McNerney,Daniela Maria Cirillo,Marco Schito,Timothy C. Rodwell,James E. Posey +28 more
TL;DR: A unified analysis variant pipeline (UVP) was developed to identify variants and assign lineage from MTBC sequence data and has an above 94% accuracy of predicting drug based on the accompanying DST results in the ReSeqTB platform.
Journal ArticleDOI
Innovations in Therapy Development for Rare Diseases Through the Rare Disease Cures Accelerator-Data and Analytics Platform
Jane Larkindale,Alexandre Betourne,Amanda Borens,Vanessa Boulanger,Vickie Theurer Crider,Pam Gavin,John T Burton,Richard Liwski,Klaus Romero,Ramona Walls,Jeffrey S. Barrett +10 more
TL;DR: The RDCA-DAP curates, standardizes, and tags data across rare disease datasets to make it findable within the database, and contains a built-in analytics platform to help visualize, interpret, and use it to support drug development.
Journal ArticleDOI
Innovations in Therapy Development for Rare Diseases Through the Rare Disease Cures Accelerator-Data and Analytics Platform
Jane Larkindale,Alexandre Betourne,Amanda Borens,Vanessa Boulanger,Vickie Theurer Crider,Pam Gavin,John T Burton,Richard Liwski,Klaus Romero,Ramona Walls,Jeffrey S. Barrett +10 more