D
Daniela Maria Cirillo
Researcher at Vita-Salute San Raffaele University
Publications - 338
Citations - 9913
Daniela Maria Cirillo is an academic researcher from Vita-Salute San Raffaele University. The author has contributed to research in topics: Tuberculosis & Mycobacterium tuberculosis. The author has an hindex of 47, co-authored 280 publications receiving 7345 citations.
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Journal ArticleDOI
Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.
Caroline Allix-Béguec,Irena Arandjelovic,Lijun Bi,Patrick Beckert,Maryline Bonnet,Phelim Bradley,Andrea M. Cabibbe,Irving Cancino-Muñoz,Mark J. Caulfield,Angkana Chaiprasert,Daniela Maria Cirillo,David A. Clifton,Iñaki Comas,Derrick W. Crook,Maria Rosaria De Filippo,Han de Neeling,Roland Diel,Francis Drobniewski,Kiatichai Faksri,Maha R. Farhat,Joy Fleming,Philip W. Fowler,Tom Fowler,Qian Gao,Jennifer L. Gardy,Deborah Gascoyne-Binzi,Ana-Luiza Gibertoni-Cruz,Ana Gil-Brusola,Tanya Golubchik,Ximena Gonzalo,Louis Grandjean,Guangxue He,Jennifer L. Guthrie,Sarah Hoosdally,Martin Hunt,Zamin Iqbal,Nazir Ahmed Ismail,James C. Johnston,Faisal Masood Khanzada,Chiea Chuen Khor,Thomas Kohl,Clare Kong,Samuel Lipworth,Qingyun Liu,Gugu Maphalala,Elena Martinez,Vanessa Mathys,Matthias Merker,Paolo Miotto,Nerges Mistry,David Moore,Megan Murray,Stefan Niemann,Shaheed V. Omar,Rick T-H Ong,Tim E. A. Peto,James E. Posey,Therdsak Prammananan,Alexander S. Pym,Camilla Rodrigues,Mabel Rodrigues,Timothy C. Rodwell,Gian Maria Rossolini,Elisabeth Sánchez Padilla,Marco Schito,Xin Shen,Jay Shendure,Vitali Sintchenko,Alexander Sloutsky,E. Grace Smith,Matthew W. Snyder,Karine Soetaert,Angela M. Starks,Philip Supply,Prapat Suriyapol,Sabira Tahseen,Patrick Tang,Yik Ying Teo,Thuong N T Thuong,Guy E. Thwaites,Enrico Tortoli,Dick van Soolingen,A. Sarah Walker,Timothy M Walker,Mark H. Wilcox,Daniel J. Wilson,David H. Wyllie,Yang Yang,Hongtai Zhang,Yanlin Zhao,Baoli Zhu +90 more
TL;DR: Genotypic predictions of the susceptibility of M. tuberculosis to first‐line drugs were found to be correlated with phenotypic susceptibility to these drugs.
Journal ArticleDOI
PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data
Silke Feuerriegel,Viola Schleusener,Patrick Beckert,Thomas Kohl,Paolo Miotto,Daniela Maria Cirillo,Andrea M. Cabibbe,Stefan Niemann,Kurt Fellenberg +8 more
TL;DR: A simple-to-use web service that provides state-of-the-art methodology to life scientists and physicians untrained in bioinformatics, combining elaborate data processing and quality control, with a treasure trove of validated resistance data collected from well-characterized samples in-house and worldwide.
Journal ArticleDOI
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.
Conor J. Meehan,Galo A. Goig,Thomas Kohl,Lennert Verboven,Anzaan Dippenaar,Matthew Ezewudo,Maha R. Farhat,Jennifer L. Guthrie,Kris Laukens,Paolo Miotto,Boatema Ofori-Anyinam,Viola Dreyer,Philip Supply,Anita Suresh,Christian Utpatel,Dick van Soolingen,Yang Zhou,Philip Ashton,Daniela Brites,Daniela Brites,Andrea M. Cabibbe,Bouke C. de Jong,Margaretha de Vos,Fabrizio Menardo,Fabrizio Menardo,Sebastien Gagneux,Sebastien Gagneux,Qian Gao,Tim H. Heupink,Qingyun Liu,Chloé Loiseau,Chloé Loiseau,Leen Rigouts,Timothy C. Rodwell,Elisa Tagliani,Timothy M Walker,Robin M. Warren,Yanlin Zhao,Matteo Zignol,Marco Schito,Jennifer L. Gardy,Daniela Maria Cirillo,Stefan Niemann,Iñaki Comas,Annelies Van Rie +44 more
TL;DR: The current landscape of WGS pipelines and applications, and best practices for M.tuberculosis WGS, are outlined, including standards for bioinformatics pipelines, curated repositories of resistance-causing variants, phylogenetic analyses, quality control and standardized reporting.
Journal ArticleDOI
Risk Assessment of Tuberculosis in Immunocompromised Patients. A TBNET Study
Martina Sester,Frank van Leth,Judith Bruchfeld,Dragos Bumbacea,Daniela Maria Cirillo,Asli Gorek Dilektasli,Asli Gorek Dilektasli,José Domínguez,Raquel Duarte,Martin Ernst,Fusun Oner Eyuboglu,Irini Gerogianni,Enrico Girardi,Delia Goletti,Jean-Paul Janssens,Inger Julander,Berit Lange,Irene Latorre,Irene Latorre,Monica Losi,Monica Losi,Roumiana Markova,Alberto Matteelli,Heather Milburn,Pernille Ravn,Theresia Scholman,Paola M. Soccal,Marina Straub,Dirk Wagner,Timo Wolf,Aslihan Yalcin,Aslihan Yalcin,Christoph Lange +32 more
TL;DR: Among immunocompromised patients evaluated in this study, progression toward tuberculosis was highest in HIV-infected individuals and was poorly predicted by TST or IGRAs.
Journal ArticleDOI
Emended description of Mycobacterium abscessus, Mycobacterium abscessus subsp. abscessus and Mycobacteriumabscessus subsp. bolletii and designation of Mycobacteriumabscessus subsp. massiliense comb. nov.
Enrico Tortoli,Thomas Kohl,Barbara A. Brown-Elliott,Alberto Trovato,Sylvia Cardoso Leão,Maria Jesus Garcia,Sruthi Vasireddy,Christine Y. Turenne,David E. Griffith,Julie V. Philley,Rossella Baldan,Silvia Campana,Lisa Cariani,Carla Colombo,Giovanni Taccetti,Antonio Teri,Stefan Niemann,Richard J. Wallace,Daniela Maria Cirillo +18 more
TL;DR: Based on prior erm(41)-related phenotypic data and current genomic data, it is concluded that the species M. abscessus encompasses, in adjunct to the presently recognized subspecies M.Abscessus subsp.