R
Robert Fragoza
Researcher at Cornell University
Publications - 19
Citations - 954
Robert Fragoza is an academic researcher from Cornell University. The author has contributed to research in topics: Population & Interactome. The author has an hindex of 10, co-authored 18 publications receiving 772 citations.
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Journal ArticleDOI
Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics
Ekta Khurana,Yao Fu,Vincenza Colonna,Vincenza Colonna,Xinmeng Jasmine Mu,Hyun Min Kang,Tuuli Lappalainen,Tuuli Lappalainen,Andrea Sboner,Andrea Sboner,Lucas Lochovsky,Jieming Chen,Arif Harmanci,Jishnu Das,Alexej Abyzov,Suganthi Balasubramanian,Kathryn Beal,Dimple Chakravarty,Danny Challis,Yuan Chen,Declan Clarke,Laura Clarke,Fiona Cunningham,Uday S. Evani,Paul Flicek,Robert Fragoza,Erik Garrison,Richard A. Gibbs,Zeynep H. Gümüş,Javier Herrero,Naoki Kitabayashi,Yong Kong,Kasper Lage,Vaja Liluashvili,Steven M. Lipkin,Daniel G. MacArthur,Daniel G. MacArthur,Gabor T. Marth,Donna M. Muzny,Tune H. Pers,Tune H. Pers,Tune H. Pers,Graham R. S. Ritchie,Jeffrey A. Rosenfeld,Jeffrey A. Rosenfeld,Cristina Sisu,Xiaomu Wei,Michael Wilson,Yali Xue,Fuli Yu,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis,Haiyuan Yu,Mark A. Rubin,Chris Tyler-Smith,Mark Gerstein +55 more
TL;DR: In this article, the authors used patterns of polymorphisms in functionally annotated regions in 1092 humans to identify deleterious variants; then, they experimentally validated candidates, finding regions particularly sensitive to mutations and variants that are disruptive because of mechanistic effects on transcription-factor binding.
Journal ArticleDOI
Interactome INSIDER: a structural interactome browser for genomic studies
Michael J. Meyer,Juan Felipe Beltran,Siqi Liang,Robert Fragoza,Aaron Rumack,Jin Liang,Xiaomu Wei,Xiaomu Wei,Haiyuan Yu +8 more
TL;DR: It is shown that mutations of predicted and known interface residues disrupt interactions at a similar rate and much more frequently than mutations outside of predicted interfaces.
Journal ArticleDOI
A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human
Tommy V. Vo,Jishnu Das,Michael J. Meyer,Nicolas A. Cordero,Nurten Akturk,Xiaomu Wei,Benjamin Jung Fair,Andrew G. Degatano,Robert Fragoza,Lisa G. Liu,Akihisa Matsuyama,Michelle Trickey,Sachi Horibata,Andrew Grimson,Hiroyuki Yamano,Minoru Yoshida,Frederick P. Roth,Jeffrey A. Pleiss,Yu Xia,Haiyuan Yu +19 more
TL;DR: FissionNet as discussed by the authors is a proteome-wide binary protein interactome for S. pombe, comprising 2,278 high-quality interactions, of which ∼ 50% were previously not reported in any species.
Journal ArticleDOI
An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders
Siwei Chen,Robert Fragoza,Lambertus Klei,Yuan Liu,Jiebiao Wang,Kathryn Roeder,Bernie Devlin,Haiyuan Yu +7 more
TL;DR: An experimentally and computationally integrated approach to investigate the functional impact of missense mutations in the context of the human interactome network and demonstrate that this interactome perturbation approach offers a generalizable framework for identifying and prioritizingmissense mutations that contribute to the risk of human disease.
Journal ArticleDOI
SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions
Swagata Pahari,Gen Li,Adithya Krishna Murthy,Siqi Liang,Robert Fragoza,Haiyuan Yu,Emil Alexov +6 more
TL;DR: SAAMBE-3D is an accurate and fast software applicable for genome-wide studies to assess the effect of amino acid mutations on protein–protein interactions and outperforms currently existing algorithms on various blind-tests.