T
Thomas Hoffmann
Researcher at Research Institute of Molecular Pathology
Publications - 15
Citations - 1034
Thomas Hoffmann is an academic researcher from Research Institute of Molecular Pathology. The author has contributed to research in topics: Cohesin & Cancer. The author has an hindex of 12, co-authored 15 publications receiving 746 citations.
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Journal ArticleDOI
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis
Matthias Muhar,Anna Ebert,Tobias Neumann,Christian Umkehrer,Julian Jude,Corinna Wieshofer,Philipp Rescheneder,Jesse J. Lipp,Veronika A. Herzog,Brian Reichholf,David A. Cisneros,Thomas Hoffmann,Moritz F. Schlapansky,Pooja Bhat,Arndt von Haeseler,Thomas D. Kocher,Anna C. Obenauf,Johann Popow,Stefan L. Ameres,Johannes Zuber,Johannes Zuber +20 more
TL;DR: It is found that BRD4 acts as general coactivator of RNA polymerase II–dependent transcription, which is broadly repressed upon high-dose BETi treatment, and to interrogate direct responses to BET bromodomain inhibitors (BETis).
Journal ArticleDOI
Transcription elongation factors represent in vivo cancer dependencies in glioblastoma
Tyler E. Miller,Tyler E. Miller,Brian B. Liau,Brian B. Liau,Lisa C. Wallace,Andrew R. Morton,Andrew R. Morton,Qi Xie,Deobrat Dixit,Daniel C. Factor,Leo J.Y. Kim,Leo J.Y. Kim,James J. Morrow,Qiulian Wu,Stephen C. Mack,Stephen C. Mack,Christopher G. Hubert,Christopher G. Hubert,Shawn M. Gillespie,Shawn M. Gillespie,William A. Flavahan,William A. Flavahan,Thomas Hoffmann,Rohit Thummalapalli,Rohit Thummalapalli,Michael T. Hemann,Patrick J. Paddison,Craig Horbinski,Johannes Zuber,Peter C. Scacheri,Bradley E. Bernstein,Bradley E. Bernstein,Paul J. Tesar,Jeremy N. Rich,Jeremy N. Rich,Jeremy N. Rich +35 more
TL;DR: In this article, the authors adapted pooled RNA interference (RNAi) screening technology for use in orthotopic patient-derived xenograft models, creating a high-throughput negative-selection screening platform in a functional in vivo tumour microenvironment.
Journal ArticleDOI
Disruption of STAT3 signalling promotes KRAS-induced lung tumorigenesis
Beatrice Grabner,Daniel Schramek,Kristina M. Mueller,Herwig P. Moll,Jasmin Svinka,Thomas Hoffmann,Eva Bauer,Leander Blaas,Natascha Hruschka,Katalin Zboray,Patricia Stiedl,Harini Nivarthi,Edith Bogner,Wolfgang Gruber,Thomas Mohr,Ralf Harun Zwick,Lukas Kenner,Valeria Poli,Fritz Aberger,Dagmar Stoiber,Gerda Egger,Harald Esterbauer,Johannes Zuber,Richard Moriggl,Robert Eferl,Balázs Győrffy,Josef M. Penninger,Helmut Popper,Emilio Casanova +28 more
TL;DR: It is demonstrated that STAT3 plays an unexpected tumour-suppressive role in KRAS mutant lung adenocarcinoma (AC) by sequestering NF-κB within the cytoplasm, thereby inhibiting IL-8-mediated myeloid tumour infiltration and tumour vascularization and hence tumour progression.
Transcription elongation factors represent in vivo cancer dependencies in glioblastoma
Tyler E. Miller,Tyler E. Miller,Brian B. Liau,Brian B. Liau,Lisa C. Wallace,Andrew R. Morton,Andrew R. Morton,Qi Xie,Deobrat Dixit,Daniel C. Factor,Leo J.Y. Kim,Leo J.Y. Kim,James J. Morrow,Qiulian Wu,Stephen C. Mack,Stephen C. Mack,Christopher G. Hubert,Christopher G. Hubert,Shawn M. Gillespie,Shawn M. Gillespie,William A. Flavahan,William A. Flavahan,Thomas Hoffmann,Rohit Thummalapalli,Rohit Thummalapalli,Michael T. Hemann,Patrick J. Paddison,Craig Horbinski,Johannes Zuber,Peter C. Scacheri,Bradley E. Bernstein,Bradley E. Bernstein,Paul J. Tesar,Jeremy N. Rich,Jeremy N. Rich,Jeremy N. Rich +35 more
TL;DR: The power of in vivo phenotypic screening to identify new classes of ‘cancer dependencies’ not identified by previous in vitro approaches is demonstrated, and could supply new opportunities for therapeutic intervention.
Journal ArticleDOI
Prediction of potent shRNAs with a sequential classification algorithm
Raphael Pelossof,Lauren Fairchild,Chun-Hao Huang,Chun-Hao Huang,Christian Widmer,Vipin T. Sreedharan,Nishi Sinha,Dan-Yu Lai,Yuanzhe Guan,Prem K. Premsrirut,Darjus F. Tschaharganeh,Thomas Hoffmann,Vishal Thapar,Qing Xiang,Ralph Garippa,Gunnar Rätsch,Gunnar Rätsch,Johannes Zuber,Scott W. Lowe,Scott W. Lowe,Christina S. Leslie,Christof Fellmann +21 more
TL;DR: SplashRNA is presented, a sequential classifier to predict potent microRNA-based short hairpin RNAs (shRNAs) and outperforms previous algorithms and reliably predicts the most efficient shRNAs for a given gene.