다중혈관 관상동맥 환자에서 y-문합을 이용하여 양쪽 내흉동맥만을 사용한 우회술의 조기 성적

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

The calculation of rate coefficients is a discipline of nonlinear science of importance to much of physics, chemistry, engineering, and biology. Fifty years after Kramers' seminal paper on thermally activated barrier crossing, the authors report, extend, and interpret much of our current understanding relating to theories of noise-activated escape, for which many of the notable contributions are originating from the communities both of physics and of physical chemistry. Theoretical as well as numerical approaches are discussed for single- and many-dimensional metastable systems (including fields) in gases and condensed phases. The role of many-dimensional transition-state theory is contrasted with Kramers' reaction-rate theory for moderate-to-strong friction; the authors emphasize the physical situation and the close connection between unimolecular rate theory and Kramers' work for weakly damped systems. The rate theory accounting for memory friction is presented, together with a unifying theoretical approach which covers the whole regime of weak-to-moderate-to-strong friction on the same basis (turnover theory). The peculiarities of noise-activated escape in a variety of physically different metastable potential configurations is elucidated in terms of the mean-first-passage-time technique. Moreover, the role and the complexity of escape in driven systems exhibiting possibly multiple, metastable stationary nonequilibrium states is identified. At lower temperatures, quantum tunneling effects start to dominate the rate mechanism. The early quantum approaches as well as the latest quantum versions of Kramers' theory are discussed, thereby providing a description of dissipative escape events at all temperatures. In addition, an attempt is made to discuss prominent experimental work as it relates to Kramers' reaction-rate theory and to indicate the most important areas for future research in theory and experiment.

Reaction-rate theory: fifty years after Kramers

N G van Kampen 1981 Amsterdam: North-Holland xiv + 419 pp price Dfl 180 This is a book which, at a lower price, could be expected to become an essential part of the library of every physical scientist concerned with problems involving fluctuations and stochastic processes, as well as those who just enjoy a beautifully written book. It provides an extensive graduate-level introduction which is clear, cautious, interesting and readable.

https://iopscience.iop.org/article/10.1088/0031-9112/34/4/040/pdf

Stochastic Processes in Physics and Chemistry

1980 Preface * 1999 Preface * 1999 Acknowledgements * Introduction * 1 Circular Logic * 2 Phase Singularities (Screwy Results of Circular Logic) * 3 The Rules of the Ring * 4 Ring Populations * 5 Getting Off the Ring * 6 Attracting Cycles and Isochrons * 7 Measuring the Trajectories of a Circadian Clock * 8 Populations of Attractor Cycle Oscillators * 9 Excitable Kinetics and Excitable Media * 10 The Varieties of Phaseless Experience: In Which the Geometrical Orderliness of Rhythmic Organization Breaks Down in Diverse Ways * 11 The Firefly Machine 12 Energy Metabolism in Cells * 13 The Malonic Acid Reagent ('Sodium Geometrate') * 14 Electrical Rhythmicity and Excitability in Cell Membranes * 15 The Aggregation of Slime Mold Amoebae * 16 Numerical Organizing Centers * 17 Electrical Singular Filaments in the Heart Wall * 18 Pattern Formation in the Fungi * 19 Circadian Rhythms in General * 20 The Circadian Clocks of Insect Eclosion * 21 The Flower of Kalanchoe * 22 The Cell Mitotic Cycle * 23 The Female Cycle * References * Index of Names * Index of Subjects

https://www.cambridge.org/core/services/aop-cambridge-core/content/view/596B270197FE27DE5FABB598B6210622/S0025557200150892a.pdf/div-class-title-span-class-italic-the-geometry-of-biological-time-span-by-a-t-winfree-pp-544-dm68-corrected-second-printing-1990-isbn-3-540-52528-9-springer-div.pdf

The geometry of biological time , by A. T. Winfree. Pp 544. DM68. Corrected Second Printing 1990. ISBN 3-540-52528-9 (Springer)

A Brownian information machine extracts work from a heat bath through a feedback process that exploits the information acquired in a measurement. For the paradigmatic case of a particle trapped in a harmonic potential, we determine how power and efficiency for two variants of such a machine operating cyclically depend on the cycle time and the precision of the positional measurements. Controlling only the center of the trap leads to a machine that has zero efficiency at maximum power whereas additional optimal control of the stiffness of the trap leads to an efficiency bounded between 1/2, which holds for maximum power, and 1 reached even for finite cycle time in the limit of perfect measurements.

Efficiency of a Brownian information machine

We investigate the propagation of a suddenly applied tension along a thermally excited semiflexible polymer using analytical approximations, scaling arguments, and numerical simulation. This problem is inherently nonlinear. We find subdiffusive propagation with a dynamical exponent of 1/4. By generalizing the internal elasticity, we show that tense strings exhibit qualitatively different tension profiles and propagation with an exponent of 1/2.

/pdf/straightening-of-thermal-fluctuations-in-semiflexible-2adrtyj7n9.pdf

Straightening of Thermal Fluctuations in Semiflexible Polymers by Applied Tension.

Many single-molecule experiments for molecular motors comprise not only the motor but also large probe particles coupled to it. The theoretical analysis of these assays, however, often takes into account only the degrees of freedom representing the motor. We present a coarse-graining method that maps a model comprising two coupled degrees of freedom which represent motor and probe particle to such an effective one-particle model by eliminating the dynamics of the probe particle in a thermodynamically and dynamically consistent way. The coarse-grained rates obey a local detailed balance condition and reproduce the net currents. Moreover, the average entropy production as well as the thermodynamic efficiency is invariant under this coarse-graining procedure. Our analysis reveals that only by assuming unrealistically fast probe particles, the coarse-grained transition rates coincide with the transition rates of the traditionally used one-particle motor models. Additionally, we find that for multicyclic motors the stall force can depend on the probe size. We apply this coarse-graining method to specific case studies of the ${\text{F}}_{1}$-ATPase and the kinesin motor.

Effective rates from thermodynamically consistent coarse-graining of models for molecular motors with probe particles

A small, bimetallic particle in a hydrogen peroxide solution can propel itself by means of an electrocatalytic reaction The swimming is driven by a flux of ions around the particle We model this process for the presence of a monovalent salt, where reaction-driven proton currents induce salt ion currents A theory for thin diffuse layers is employed, which yields nonlinear, coupled transport equations The boundary conditions include a compact Stern layer of adsorbed ions Electrochemical processes on the particle surface are modeled with a first order reaction of the Butler-Volmer type The equations are solved numerically for the swimming speed An analytical approximation is derived under the assumption that the decomposition of hydrogen peroxide occurs mainly without inducing an electric current We find that the swimming speed increases linearly with hydrogen peroxide concentration for small concentrations The influence of ion diffusion on the reaction rate can lead to a concave shape of the function of speed vs hydrogen peroxide concentration The compact layer of ions on the particle diminishes the reaction rate and consequently reduces the speed Our results are consistent with published experimental data

Nonlinear, electrocatalytic swimming in the presence of salt

We study the large deviation function for the entropy production rate in two driven one-dimensional systems: the asymmetric random walk on a discrete lattice and Brownian motion in a continuous periodic potential. We compare two approaches: the Donsker-Varadhan theory and the Freidlin-Wentzell theory. We show that the wings of the large deviation function are dominated by a single optimal trajectory: either in forward (positive rate) or in backward direction (negative rate). The joining of both branches at zero entropy production implies a non-differentiability and thus the appearance of a "kink". However, around zero entropy production many trajectories contribute and thus the kink is smeared out.

Udo Seifert

Papers

Efficiency of a Brownian information machine

Straightening of Thermal Fluctuations in Semiflexible Polymers by Applied Tension.

Effective rates from thermodynamically consistent coarse-graining of models for molecular motors with probe particles

Nonlinear, electrocatalytic swimming in the presence of salt

Large deviation function for the entropy production: Optimal trajectory and role of fluctuations