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Xin Zhou
Researcher at St. Jude Children's Research Hospital
Publications - 262
Citations - 17637
Xin Zhou is an academic researcher from St. Jude Children's Research Hospital. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 36, co-authored 71 publications receiving 13444 citations. Previous affiliations of Xin Zhou include Rice University & Washington University in St. Louis.
Papers
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Journal ArticleDOI
Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom
Zhanyou Xu,Dandan Zhang,Jun Hu,Jun Hu,Xin Zhou,Xia Ye,Kristen L. Reichel,Nathan R. Stewart,Ryan D. Syrenne,Xiaohan Yang,Peng Gao,Weibing Shi,Crissa Doeppke,Robert W. Sykes,Jason N. Burris,Joseph J. Bozell,Max Zong-Ming Cheng,Douglas G. Hayes,Nicole Labbé,Mark F. Davis,C. Neal Stewart,Joshua S. Yuan +21 more
TL;DR: The research revealed that the complete lignin biosynthesis pathway first appeared in moss; the pathway is absent in green algae, and the rapid expansion of lignIn biosynthesis genes indicated that the translation of transgenic lIGNin modification strategies from model species to bioenergy feedstock might only be successful between the closely relevant species within the same family.
Journal ArticleDOI
Exploring long-range genome interactions using the WashU Epigenome Browser.
Xin Zhou,Rebecca F. Lowdon,Daofeng Li,Heather A. Lawson,Pamela A. F. Madden,Joseph F. Costello,Ting Wang +6 more
TL;DR: The WashU Epigenome Browser is extended, which currently hosts thousands of epigenome and transcriptome data sets for multiple cell types, tissues, individuals and species, to support multiple types of long-range genome interaction data, consistent with the hypothesis that chromatin domains are stable across cell types but can have different epigenetic profiles in different cells.
Journal ArticleDOI
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
Mingchao Xie,Chibo Hong,Bo Zhang,Rebecca F. Lowdon,Xiaoyun Xing,Daofeng Li,Xin Zhou,Hyung Joo Lee,Cecile L. Maire,Keith L. Ligon,Philippe Gascard,Mahvash Sigaroudinia,Thea D. Tlsty,Theresa A. Kadlecek,Arthur Weiss,Henriette O'Geen,Peggy J. Farnham,Pamela A. F. Madden,Andrew J. Mungall,Angela Tam,Baljit Kamoh,Stephanie Cho,Richard A. Moore,Martin Hirst,Martin Hirst,Marco A. Marra,Joseph F. Costello,Ting Wang +27 more
TL;DR: Examination of genome-wide DNA methylation status within 928 TE subfamilies in human embryonic and adult tissues identified unexpected tissue-specific and subfamily-specific hypomethylation signatures, suggesting sequences derived from TEs may be responsible for wiring tissue type–specific regulatory networks and may have acquired tissue- specific epigenetic regulation.
Journal ArticleDOI
Orthotopic patient-derived xenografts of paediatric solid tumours
Elizabeth Stewart,Sara M. Federico,Xiang Chen,Anang A. Shelat,Cori Bradley,Brittney Gordon,Asa Karlstrom,Nathaniel R. Twarog,Michael R. Clay,Armita Bahrami,Burgess B. Freeman,Beisi Xu,Xin Zhou,Jianrong Wu,Victoria Honnell,Monica Ocarz,Kaley Blankenship,Jason Dapper,Elaine R. Mardis,Richard K. Wilson,James R. Downing,Jinghui Zhang,John Easton,Alberto S. Pappo,Michael A. Dyer,Michael A. Dyer,Michael A. Dyer +26 more
TL;DR: It is shown that the combination of a WEE1 inhibitor (AZD1775), irinotecan, and vincristine can lead to complete response in multiple rhabdomyosarcoma orthotopic patient-derived xenografts tumours in vivo.
Journal ArticleDOI
The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri,Beisi Xu,Lu Wang,Xiang Chen,Daniel J. Hiler,Lyra Griffiths,Marc Valentine,Abbas Shirinifard,Suresh Thiagarajan,Andras Sablauer,Marie E. Barabas,Jiakun Zhang,Dianna A. Johnson,Sharon Frase,Xin Zhou,John Easton,Jinghui Zhang,Elaine R. Mardis,Richard K. Wilson,James R. Downing,Michael A. Dyer,Michael A. Dyer,Michael A. Dyer +22 more
TL;DR: In the developing retina, multipotent neural progenitors undergo unidirectional differentiation in a precise spatiotemporal order as mentioned in this paper, and the most dramatic change was derepression of cell-type-specific differentiation programs.