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Xin Zhou
Researcher at St. Jude Children's Research Hospital
Publications - 262
Citations - 17637
Xin Zhou is an academic researcher from St. Jude Children's Research Hospital. The author has contributed to research in topics: Computer science & Medicine. The author has an hindex of 36, co-authored 71 publications receiving 13444 citations. Previous affiliations of Xin Zhou include Rice University & Washington University in St. Louis.
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Journal ArticleDOI
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
R. Alan Harris,Ting Wang,Cristian Coarfa,Raman P. Nagarajan,Chibo Hong,Sara L. Downey,Brett E. Johnson,Shaun D. Fouse,Allen Delaney,Yongjun Zhao,Adam B. Olshen,Tracy J. Ballinger,Xin Zhou,Kevin J. Forsberg,Junchen Gu,Lorigail Echipare,Henriette O'Geen,Ryan Lister,Mattia Pelizzola,Yuanxin Xi,Charles B. Epstein,Bradley E. Bernstein,R. David Hawkins,Bing Ren,Wen-Yu Chung,Hongcang Gu,Christoph Bock,Andreas Gnirke,Michael Q. Zhang,David Haussler,Joseph A. Ecker,Wei Li,Peggy J. Farnham,Robert A. Waterland,Alexander Meissner,Marco A. Marra,Martin Hirst,Aleksandar Milosavljevic,Joseph F. Costello +38 more
TL;DR: This work combined MeDIP-seq with methylation-sensitive restriction enzyme (MRE-seq) sequencing for comprehensive methylome coverage at lower cost and detected regions with allele-specific epigenetic states, identifying most known imprinted regions and new loci with Monoallelic epigenetic marks and monoallelic expression.
Journal ArticleDOI
The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia
Yu Liu,John Easton,Ying Shao,Jamie L. Maciaszek,Zhaoming Wang,Mark R. Wilkinson,Kelly McCastlain,Michael N. Edmonson,Stanley Pounds,Lei Shi,Xin Zhou,Xiaotu Ma,Edgar Sioson,Yongjin Li,Michael Rusch,Pankaj Gupta,Deqing Pei,Cheng Cheng,Malcolm A. Smith,Jaime M. Guidry Auvil,Daniela S. Gerhard,Mary V. Relling,Naomi J. Winick,Andrew J. Carroll,Nyla A. Heerema,Elizabeth A. Raetz,Meenakshi Devidas,Cheryl L. Willman,Richard C. Harvey,William L. Carroll,Kimberly P. Dunsmore,Stuart S. Winter,Brent L. Wood,Brian P. Sorrentino,James R. Downing,Mignon L. Loh,Stephen P. Hunger,Jinghui Zhang,Charles G. Mullighan +38 more
TL;DR: Using integrated genomic analysis of 264 T-ALL cases, 106 putative driver genes are identified and new mechanisms of coding and noncoding alteration are described, which suggests that different signaling pathways have distinct roles according to maturational stage.
Journal ArticleDOI
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Xiaotu Ma,Yu Liu,Yanling Liu,Ludmil B. Alexandrov,Michael N. Edmonson,Charles Gawad,Xin Zhou,Yongjin Li,Michael Rusch,John Easton,Robert Huether,Veronica Gonzalez-Pena,Mark R. Wilkinson,Leandro C. Hermida,Sean Davis,Edgar Sioson,Stanley Pounds,Xueyuan Cao,Rhonda E. Ries,Zhaoming Wang,Xiang Chen,Li Dong,Sharon J. Diskin,Malcolm A. Smith,Jaime M. Guidry Auvil,Paul S. Meltzer,Ching C. Lau,Elizabeth J. Perlman,John M. Maris,Soheil Meshinchi,Stephen P. Hunger,Daniela S. Gerhard,Jinghui Zhang +32 more
TL;DR: A pan-cancer study of somatic alterations, including single nucleotide variants, small insertions or deletions, structural variations, copy number alterations, gene fusions and internal tandem duplications in 1,699 paediatric leukaemias and solid tumours across six histotypes, provides a comprehensive genomic architecture for paediatric cancers.
Journal ArticleDOI
Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development
Hongliang Zhu,Fuqu Hu,Ronghui Wang,Xin Zhou,Xin Zhou,Sing-Hoi Sze,Lisa Wen Liou,Ashley Barefoot,Martin B. Dickman,Xiuren Zhang +9 more
TL;DR: It is proposed that AGO10 functions as a decoy for miR166/165 to maintain the SAM, preventing their incorporation into AGO1 complexes and the subsequent repression of HD-ZIP III gene expression.
Journal ArticleDOI
PMRD: plant microRNA database
Zhenhai Zhang,Jingyin Yu,Daofeng Li,Zuyong Zhang,Fengxia Liu,Xin Zhou,Tao Wang,Yi Ling,Zhen Su +8 more
TL;DR: The plant miRNA database (PMRD) integrates available plant miRNAs data deposited in public databases, gleaned from the recent literature, and data generated in-house, and contains sequence information, secondary structure, target genes, expression profiles and a genome browser.