Z
Zhao Xu
Researcher at Fudan University
Publications - 19
Citations - 3133
Zhao Xu is an academic researcher from Fudan University. The author has contributed to research in topics: Genome & Gene prediction. The author has an hindex of 14, co-authored 19 publications receiving 2548 citations. Previous affiliations of Zhao Xu include Chinese Academy of Sciences & Beijing Institute of Genomics.
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Journal ArticleDOI
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
TL;DR: LTR_FINDER is a system capable of scanning large-scale sequences rapidly and the first web server for ab initio LTR retrotransposon finding and illustrated its usage and performance on the genome of Saccharomyces cerevisiae.
Journal ArticleDOI
The Genomes of Oryza sativa: a history of duplications.
Jun Yu,Jun Yu,Jun Wang,Jun Wang,Wei Lin,Songgang Li,Songgang Li,Heng Li,Heng Li,Jun Zhou,Peixiang Ni,Wei Dong,Songnian Hu,Changqing Zeng,Jianguo Zhang,Yong Zhang,Yong Zhang,Ruiqiang Li,Zuyuan Xu,Shengting Li,Xianran Li,Hongkun Zheng,Lijuan Cong,Liang Lin,Jianning Yin,Jianing Geng,Guangyuan Li,Jianping Shi,Juan Liu,Hong Lv,Jun Li,Jing Wang,Jing Wang,Yajun Deng,Longhua Ran,Xiaoli Shi,Xiaoli Shi,Xiyin Wang,Xiyin Wang,Qingfa Wu,Changfeng Li,Xiaoyu Ren,Jingqiang Wang,Xiaoling Wang,Dawei Li,Dongyuan Liu,Xiaowei Zhang,Zhendong Ji,Wenming Zhao,Yongqiao Sun,Zhenpeng Zhang,Jingyue Bao,Yujun Han,Lingli Dong,Jia Ji,Peng Chen,Shuming Wu,Jinsong Liu,Ying Xiao,Dongbo Bu,Jianlong Tan,Li Yang,Chen Ye,Jingfen Zhang,Jingyi Xu,Yan Zhou,Yingpu Yu,Bing Zhang,Shulin Zhuang,Haibin Wei,Bin Liu,Meng Lei,Hong Yu,Yuanzhe Li,Hao Xu,Shulin Wei,Ximiao He,Lijun Fang,Zengjin Zhang,Yunze Zhang,Xiangang Huang,Zhixi Su,Wei Tong,Jinhong Li,Zongzhong Tong,Shuangli Li,Jia Ye,Lishun Wang,Lin Fang,Tingting Lei,Chen Chen,Huan Chen,Zhao Xu,Haihong Li,Haiyan Huang,Feng Zhang,Huayong Xu,Na Li,Caifeng Zhao,Shuting Li,Lijun Dong,Yanqing Huang,Long Li,Yan Xi,Qiuhui Qi,Wenjie Li,Bo Zhang,Wei Hu,Yanling Zhang,Xiangjun Tian,Yongzhi Jiao,Xiaohu Liang,Jiao Jin,Jiao Jin,Lei Gao,Lei Gao,Wei-Mou Zheng,Wei-Mou Zheng,Bailin Hao,Bailin Hao,Siqi Liu,Siqi Liu,Wen Wang,Wen Wang,Longping Yuan,Mengliang Cao,Jason E. McDermott,Ram Samudrala,Jian Wang,Jian Wang,Gane Ka-Shu Wong,Gane Ka-Shu Wong,Gane Ka-Shu Wong,Huanming Yang,Huanming Yang +134 more
TL;DR: A more inclusive new approach for analyzing duplication history is introduced here, which reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications.
Journal ArticleDOI
A fungal phylogeny based on 82 complete genomes using the composition vector method
TL;DR: Using different input data and methodology, the CVTree approach is a good complement to the standard methods and brings about more confidence to the current understanding of the fungal branch of TOL.
Journal ArticleDOI
CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes
Zhao Xu,Bailin Hao +1 more
TL;DR: The CVTree web server presented here is a new implementation of the whole genome-based, alignment-free composition vector (CV) method for phylogenetic analysis that is more efficient and user-friendly than the previously published version in the 2004 web server issue of Nucleic Acids Research.
Journal ArticleDOI
Vertebrate gene predictions and the problem of large genes.
Jun Wang,Jun Wang,Shengting Li,Yong Zhang,Yong Zhang,Hongkun Zheng,Zhao Xu,Jia Ye,Jun Yu,Jun Yu,Jun Yu,Gane Ka-Shu Wong,Gane Ka-Shu Wong,Gane Ka-Shu Wong +13 more
TL;DR: It is shown that although the ab initio predictions have an intrinsically high false-positive rate, they also have a consistently low false-negative rate, which means genes of the most extreme sizes, especially very large genes, are most likely to be incorrectly predicted.