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Peixiang Ni
Researcher at Beijing Genomics Institute
Publications - 34
Citations - 15011
Peixiang Ni is an academic researcher from Beijing Genomics Institute. The author has contributed to research in topics: Genome & Genomics. The author has an hindex of 22, co-authored 34 publications receiving 13452 citations. Previous affiliations of Peixiang Ni include Chinese Academy of Sciences & Fudan University.
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Journal ArticleDOI
Genome sequence and analysis of the tuber crop potato.
Xun Xu,Shengkai Pan,Shifeng Cheng,Bo Zhang,Mu D,Peixiang Ni,Gengyun Zhang,Shuang Yang,Ruiqiang Li,Jun Wang,Gisella Orjeda,Frank Guzman,Torres M,Roberto Lozano,Olga Ponce,Diana Martinez,De la Cruz G,Chakrabarti Sk,Patil Vu,Konstantin G. Skryabin,Boris B. Kuznetsov,Nikolai V. Ravin,Tatjana V. Kolganova,Alexey V. Beletsky,Andrey V. Mardanov,Di Genova A,Dan Bolser,David M. A. Martin,Li G,Yang Y,Hanhui Kuang,Hu Q,Xiong X,Gerard J. Bishop,Boris Sagredo,Nilo Mejía,Zagorski W,Robert Gromadka,Jan Gawor,Pawel Szczesny,Sanwen Huang,Zhang Z,Liang C,He J,Li Y,He Y,Xu J,Youjun Zhang,Xie B,Du Y,Qu D,Merideth Bonierbale,Marc Ghislain,Herrera Mdel R,Giovanni Giuliano,Marco Pietrella,Gaetano Perrotta,Paolo Facella,O'Brien K,Sergio Enrique Feingold,Barreiro Le,Massa Ga,Luis Aníbal Diambra,Brett R Whitty,Brieanne Vaillancourt,Lin H,Alicia N. Massa,Geoffroy M,Lundback S,Dean DellaPenna,Buell Cr,Sanjeev Kumar Sharma,David Marshall,Robbie Waugh,Glenn J. Bryan,Destefanis M,Istvan Nagy,Dan Milbourne,Susan Thomson,Mark Fiers,Jeanne M. E. Jacobs,Kåre Lehmann Nielsen,Mads Sønderkær,Marina Iovene,Giovana Augusta Torres,Jiming Jiang,Richard E. Veilleux,Christian W. B. Bachem,de Boer J,Theo Borm,Bjorn Kloosterman,van Eck H,Erwin Datema,Hekkert Bt,Aska Goverse,van Ham Rc,Richard G. F. Visser +96 more
TL;DR: The potato genome sequence provides a platform for genetic improvement of this vital crop and predicts 39,031 protein-coding genes and presents evidence for at least two genome duplication events indicative of a palaeopolyploid origin.
Journal ArticleDOI
The oyster genome reveals stress adaptation and complexity of shell formation
Guofan Zhang,Xiaodong Fang,Ximing Guo,Li Li,Ruibang Luo,Fei Xu,Pengcheng Yang,Linlin Zhang,Xiaotong Wang,Haigang Qi,Zhiqiang Xiong,Huayong Que,Yinlong Xie,Peter W. H. Holland,Jordi Paps,Yabing Zhu,Fucun Wu,Yuanxin Chen,Jiafeng Wang,Chunfang Peng,Jie Meng,Lan Yang,Jun Liu,Bo Wen,Na Zhang,Zhiyong Huang,Qihui Zhu,Yue Feng,Andrew S. Mount,Dennis Hedgecock,Zhe Xu,Yunjie Liu,Tomislav Domazet-Lošo,Yishuai Du,Xiaoqing Sun,Shoudu Zhang,Binghang Liu,Peizhou Cheng,Xuanting Jiang,Juan Li,Dingding Fan,Wei Wang,Wenjing Fu,Tong Wang,Bo Wang,Jibiao Zhang,Zhiyu Peng,Yingxiang Li,Na Li,Jinpeng Wang,Maoshan Chen,Yan He,Fengji Tan,Xiaorui Song,Qiumei Zheng,Ronglian Huang,Hailong Yang,Du Xuedi,Li Chen,Mei Yang,Patrick M. Gaffney,Shan Wang,Longhai Luo,Zhicai She,Yao Ming,Huang Wen,Shu Zhang,Baoyu Huang,Yong Zhang,Tao Qu,Peixiang Ni,Guoying Miao,Junyi Wang,Qiang Wang,Christian E. W. Steinberg,Haiyan Wang,Ning Li,Lumin Qian,Guojie Zhang,Yingrui Li,Huanming Yang,Xiao Liu,Jian Wang,Ye Yin,Jun Wang +84 more
TL;DR: The sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy and transcriptomes of development and stress response and the proteome of the shell are reported, showing that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes.
Journal ArticleDOI
Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude
Xin Yi,Yu Liang,Emilia Huerta-Sanchez,Xin Jin,Zha Xi Ping Cuo,John E. Pool,John E. Pool,Xun Xu,Hui Jiang,Nicolas Vinckenbosch,Thorfinn Sand Korneliussen,Hancheng Zheng,Tao Liu,Weiming He,Kui Li,Ruibang Luo,Xifang Nie,Honglong Wu,Meiru Zhao,Hongzhi Cao,Jing Zou,Ying Shan,Shuzheng Li,Qi Yang,Asan,Peixiang Ni,Geng Tian,Junming Xu,Xiao Liu,Tao Jiang,Renhua Wu,Guangyu Zhou,Meifang Tang,Junjie Qin,Tong Wang,Shuijian Feng,Guohong Li,Huasang,Jiangbai Luosang,Wei Wang,Fang Chen,Yading Wang,Xiaoguang Zheng,Zhuo Li,Zhuoma Bianba,Ge Yang,Xiznping Wang,Shuhui Tang,Guoyi Gao,Yong Chen,Zhen Luo,Lamu Gusang,Zheng Cao,Qinghui Zhang,Wei-Han OuYang,Xiaoli Ren,Huiqing Liang,Huisong Zheng,Yebo Huang,Jingxiang Li,Lars Bolund,Karsten Kristiansen,Yingrui Li,Yong Zhang,Xiuqing Zhang,Ruiqiang Li,Songgang Li,Huanming Yang,Rasmus Nielsen,Rasmus Nielsen,Jun Wang,Jing Wang +71 more
TL;DR: A population genomic survey has revealed a functionally important locus in genetic adaptation to high altitude, and the strongest signal of natural selection came from endothelial Per-Arnt-Sim domain protein 1 (EPAS1), a transcription factor involved in response to hypoxia.
Journal ArticleDOI
The genome of the cucumber, Cucumis sativus L.
Sanwen Huang,Ruiqiang Li,Zhonghua Zhang,Li Li,Xingfang Gu,Wei Fan,William J. Lucas,Xiaowu Wang,Bingyan Xie,Peixiang Ni,Yuanyuan Ren,Hongmei Zhu,Jun Li,Kui Lin,Weiwei Jin,Zhangjun Fei,Guangcun Li,Jack E. Staub,Andrzej Kilian,Edwin A. G. van der Vossen,Yang Wu,Jie Guo,Jun He,Zhiqi Jia,Yi Ren,Geng Tian,Yao Lu,Jue Ruan,Wubin Qian,Mingwei Wang,Quanfei Huang,Bo Li,Zhaoling Xuan,Jianjun Cao,Asan,Zhigang Wu,Juanbin Zhang,Qingle Cai,Yinqi Bai,Bowen Zhao,Yonghua Han,Ying Li,Xuefeng Li,Shenhao Wang,Qiuxiang Shi,Shiqiang Liu,Won Kyong Cho,Jae-Yean Kim,Yong Xu,Katarzyna Heller-Uszynska,Han Miao,Zhouchao Cheng,Shengping Zhang,Jian Wu,Yuhong Yang,Houxiang Kang,Man Li,Huiqing Liang,Xiaoli Ren,Zhongbin Shi,Ming Wen,Min Jian,Hailong Yang,Guojie Zhang,Zhentao Yang,Rui Chen,Shifang Liu,Jianwen Li,Lijia Ma,Hui Liu,Yan Zhou,Jing Zhao,Xiaodong Fang,Guoqing Li,Lin Fang,Yingrui Li,Dongyuan Liu,Hongkun Zheng,Yong Zhang,Nan Qin,Zhuo Li,Guohua Yang,Shuang Yang,Lars Bolund,Karsten Kristiansen,Hancheng Zheng,Shaochuan Li,Xiuqing Zhang,Huanming Yang,Jing Wang,Rifei Sun,Zhang Baoxi,Shuzhi Jiang,Jun Wang,Yongchen Du,Songgang Li +95 more
TL;DR: This study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo, and identifies 686 gene clusters related to phloem function.
Journal ArticleDOI
Analyses of pig genomes provide insight into porcine demography and evolution
Martien A. M. Groenen,Alan Archibald,Hirohide Uenishi,Christopher K. Tuggle,Yasuhiro Takeuchi,Max F. Rothschild,Claire Rogel-Gaillard,Chankyu Park,Denis Milan,Hendrik-Jan Megens,Shengting Li,Denis M. Larkin,Heebal Kim,Laurent A. F. Frantz,Mario Caccamo,Hyeonju Ahn,Bronwen Aken,Anna Anselmo,Christian Anthon,Loretta Auvil,Bouabid Badaoui,Craig W. Beattie,Christian Bendixen,Daniel Berman,Frank Blecha,Jonas Blomberg,Lars Bolund,Mirte Bosse,Sara Botti,Zhan Bujie,Megan Bystrom,Boris Capitanu,Denise Carvalho-Silva,Patrick Chardon,Celine Chen,Ryan Cheng,Sang-Haeng Choi,William Chow,Richard Clark,C M Clee,Richard P. M. A. Crooijmans,Harry D. Dawson,Patrice Dehais,Fioravante De Sapio,Bert Dibbits,Nizar Drou,Zhi-Qiang Du,Kellye Eversole,João Fadista,João Fadista,Susan Fairley,Thomas Faraut,Geoffrey J. Faulkner,Geoffrey J. Faulkner,Katie E. Fowler,Merete Fredholm,Eric Fritz,James G. R. Gilbert,Elisabetta Giuffra,Elisabetta Giuffra,Jan Gorodkin,Darren K. Griffin,Jennifer Harrow,Alexander Hayward,Kerstin Howe,Zhi-Liang Hu,Sean Humphray,Sean Humphray,Toby Hunt,Henrik Hornshøj,Jin-Tae Jeon,Patric Jern,Matthew Jones,Jerzy Jurka,Hiroyuki Kanamori,Ronan Kapetanovic,Jaebum Kim,Jaebum Kim,Jae-Hwan Kim,Kyu-Won Kim,Tae-Hun Kim,Greger Larson,Kyooyeol Lee,Kyung-Tai Lee,Richard M. Leggett,Harris A. Lewin,Yingrui Li,Wan Sheng Liu,Jane E. Loveland,Yao Lu,Joan K. Lunney,Jian Ma,Ole Madsen,Katherine M. Mann,Katherine M. Mann,Lucy Matthews,Stuart McLaren,Takeya Morozumi,Michael P. Murtaugh,Jitendra Narayan,Dinh Truong Nguyen,Peixiang Ni,Song-Jung Oh,Suneel Kumar Onteru,Frank Panitz,Eung-Woo Park,Hong-Seog Park,Géraldine Pascal,Yogesh Paudel,Miguel Pérez-Enciso,Ricardo H. Ramirez-Gonzalez,James M. Reecy,Sandra L. Rodriguez-Zas,Gary A. Rohrer,Lauretta A. Rund,Yongming Sang,Kyle M. Schachtschneider,Joshua G. Schraiber,John C. Schwartz,Linda Scobie,Carol Scott,Stephen M. J. Searle,Bertrand Servin,Bruce R. Southey,Göran O. Sperber,Peter F. Stadler,Jonathan V. Sweedler,Hakim Tafer,Bo Thomsen,Rashmi Wali,Jian Wang,Jun Wang,Simon D. M. White,Xun Xu,Martine Yerle,Guojie Zhang,Jianguo Zhang,Jie Zhang,Shuhong Zhao,Jane Rogers,Carol Churcher,Lawrence B. Schook +141 more
TL;DR: The assembly and analysis of the genome sequence of a female domestic Duroc pig and a comparison with the genomes of wild and domestic pigs from Europe and Asia reveal a deep phylogenetic split between European and Asian wild boars ∼1 million years ago.