Advances in functional and structural MR image analysis and implementation as FSL.
Stephen M. Smith,Mark Jenkinson,Mark W. Woolrich,Mark W. Woolrich,Christian F. Beckmann,Behrens Tej.,Heidi Johansen-Berg,Peter R. Bannister,M De Luca,Ivana Drobnjak,D E Flitney,Rami K. Niazy,J Saunders,J Vickers,Yongyue Zhang,N. De Stefano,J M Brady,Paul M. Matthews +17 more
TLDR
A review of the research carried out by the Analysis Group at the Oxford Centre for Functional MRI of the Brain (FMRIB) on the development of new methodologies for the analysis of both structural and functional magnetic resonance imaging data.About:
This article is published in NeuroImage.The article was published on 2004-01-01 and is currently open access. It has received 12097 citations till now. The article focuses on the topics: FMRIB Software Library & Neural tract.read more
Citations
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Journal ArticleDOI
The organization of the human cerebral cortex estimated by intrinsic functional connectivity
B.T. Thomas Yeo,Fenna M. Krienen,Jorge Sepulcre,Jorge Sepulcre,Mert R. Sabuncu,Mert R. Sabuncu,Danial Lashkari,Marisa O. Hollinshead,Marisa O. Hollinshead,Joshua L. Roffman,Jordan W. Smoller,Lilla Zöllei,Jonathan R. Polimeni,Bruce Fischl,Bruce Fischl,Hesheng Liu,Randy L. Buckner +16 more
TL;DR: In this paper, the organization of networks in the human cerebrum was explored using resting-state functional connectivity MRI data from 1,000 subjects and a clustering approach was employed to identify and replicate networks of functionally coupled regions across the cerebral cortex.
Journal ArticleDOI
Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data.
Stephen M. Smith,Mark Jenkinson,Heidi Johansen-Berg,Daniel Rueckert,Thomas E. Nichols,Clare E. Mackay,Kate E. Watkins,Olga Ciccarelli,M Z Cader,Paul M. Matthews,Timothy E.J. Behrens +10 more
TL;DR: TBSS aims to improve the sensitivity, objectivity and interpretability of analysis of multi-subject diffusion imaging studies by solving the question of how to align FA images from multiple subjects in a way that allows for valid conclusions to be drawn from the subsequent voxelwise analysis.
Journal ArticleDOI
New advances in the Clinica software platform for clinical neuroimaging studies
Alexandre Routier,Arnaud Marcoux,Mauricio Diaz Melo,Jérémy Guillon,Jorge Samper-González,Junhao Wen,Simona Bottani,Alexis Guyot,Elina Thibeau-Sutre,Marc Teichmann,Marie-Odile Habert,Stanley Durrleman,Ninon Burgos,Olivier Colliot +13 more
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3D Slicer as an image computing platform for the Quantitative Imaging Network.
Andriy Fedorov,Reinhard Beichel,Jayashree Kalpathy-Cramer,Julien Finet,Jean-Christophe Fillion-Robin,Sonia Pujol,Christian Bauer,Dominique Jennings,Fiona M. Fennessy,Milan Sonka,John M. Buatti,Stephen R. Aylward,James V. Miller,Steve Pieper,Ron Kikinis +14 more
TL;DR: An overview of 3D Slicer is presented as a platform for prototyping, development and evaluation of image analysis tools for clinical research applications and the utility of the platform in the scope of QIN is illustrated.
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Correspondence of the brain's functional architecture during activation and rest.
Stephen M. Smith,Peter T. Fox,Karla L. Miller,David C. Glahn,P. Mickle Fox,Clare E. Mackay,Nicola Filippini,Kate E. Watkins,Roberto Toro,Angela R. Laird,Christian F. Beckmann,Christian F. Beckmann +11 more
TL;DR: It is concluded that the full repertoire of functional networks utilized by the brain in action is continuously and dynamically “active” even when at “rest.”
References
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Fast robust automated brain extraction
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Improved optimization for the robust and accurate linear registration and motion correction of brain images
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Functional connectivity in the motor cortex of resting human brain using echo-planar MRI.
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A global optimisation method for robust affine registration of brain images
Mark Jenkinson,Stephen M. Smith +1 more
TL;DR: It is demonstrated that the use of local optimisation methods together with the standard multi-resolution approach is not sufficient to reliably find the global minimum, so a global optimisation method is proposed that is specifically tailored to this form of registration.
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Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm
TL;DR: The authors propose a novel hidden Markov random field (HMRF) model, which is a stochastic process generated by a MRF whose state sequence cannot be observed directly but which can be indirectly estimated through observations.