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Journal ArticleDOI

Allelopathy in freshwater cyanobacteria

TLDR
The role of allelopathy in cyanobacteria ecology is still not well understood, and its clarification should benefit from carefully designed field studies, chemical characterization of allelochemicals and new methodological approaches at the “omics” level.
Abstract
Freshwater cyanobacteria produce several bioactive secondary metabolites with diverse chemical structure, which may achieve high concentrations in the aquatic medium when cyanobacterial blooms occur. Some of the compounds released by cyanobacteria have allelopathic properties, influencing the biological processes of other phytoplankton or aquatic plants. These kinds of interactions are more easily detectable under laboratory studies; however their ecological relevance is often debated. Recent research has discovered new allelopathic properties in some cyanobacteria species, new allelochemicals and elucidated some of the allelopathic mechanisms. Ecosystem-level approaches have shed some light on the factors that influence allelopathic interactions, as well as how cyanobacteria may be able to modulate their surrounding environment by means of allelochemical release. Nevertheless, the role of allelopathy in cyanobacteria ecology is still not well understood, and its clarification should benefit from carefully designed field studies, chemical characterization of allelochemicals and new methodological approaches at the "omics" level.

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Strategies to control biological contaminants during microalgal cultivation in open ponds.

TL;DR: Control of photosynthetic organisms and bacteria by good cultivation practices and the use of probiotics are critically important, as these organisms compete with the microalgal culture for sunlight and organic substrate.
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Understanding the influence of glyphosate on the structure and function of freshwater microbial community in a microcosm.

TL;DR: Adding glyphosate in artificial microcosms did not strongly affect the aquatic microbial community composition but did alter the community's transcription levels, which might be potentially explained by that some microbes could alleviate glyphosate's toxicity by utilizing glyphosate as a P source.
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Combatting cyanobacteria with hydrogen peroxide: a laboratory study on the consequences for phytoplankton community and diversity.

TL;DR: Experiments in which treated samples were re-inoculated with original P. agardhii-rich lake water demonstrated prolonged suppression of cyanobacteria, and displayed a remarkable stability of the newly developed post-HP treatment state of the phytoplankton community.
Journal ArticleDOI

Marine Proteomics: A Critical Assessment of an Emerging Technology

TL;DR: This review is to explore the application of proteomics methodologies to marine systems, assess the technical approaches that have been used, and evaluate the pros and cons of this proteomic research, with the intent of providing a critical analysis of its future roles in marine sciences.
Journal ArticleDOI

The toxic cyanobacterium nostoc sp. strain 152 produces highest amounts of microcystin and nostophycin under stress conditions.

TL;DR: The physiological regulation of the production of the toxic heptapeptide microcystin (MC) and the nontoxic related peptide nostophycin (NP) in the benthic cyanobacterium Nostoc sp.
References
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Journal ArticleDOI

Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

TL;DR: Phylogenetic analysis of the retrieved rRNA sequence of an uncultured microorganism reveals its closest culturable relatives and may, together with information on the physicochemical conditions of its natural habitat, facilitate more directed cultivation attempts.
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Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents

TL;DR: It is found that inactivation of Upf1p and Xrn1p causes common as well as unique effects on protein expression, and the use of 4-fold multiplexing to enable relative protein measurements simultaneously with determination of absolute levels of a target protein using synthetic isobaric peptide standards.
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Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems.

TL;DR: A snapshot of the state-of-the-art in real-time RT-PCR is provided and some of the problems associated with interpreting results that are numerical and lend themselves to statistical analysis, yet whose accuracy is significantly affected by reagent and operator variability are described.
Journal ArticleDOI

Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream.

TL;DR: The recent flood of reports using real-time Q-PCR testifies to the transformation of this technology from an experimental tool into the scientific mainstream and this review will help guide the reader through the variables that can limit the usefulness of thistechnology.
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