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Open AccessJournal ArticleDOI

An ATP-responsive metabolic cassette comprised of inositol tris/tetrakisphosphate kinase 1 (ITPK1) and inositol pentakisphosphate 2-kinase (IPK1) buffers diphosphosphoinositol phosphate levels.

TLDR
The findings and the methods described will enable a full appraisal of the role of diphosphoinositol phosphates in plants and particularly the relative contribution of reversible inositol phosphate hydroxykinase and inositl phosphate phosphokinase activities to plant physiology.
Abstract
Inositol polyphosphates are ubiquitous molecular signals in metazoans, as are their pyrophosphorylated derivatives that bear a so-called 'high-energy' phosphoanhydride bond. A structural rationale is provided for the ability of Arabidopsis inositol tris/tetrakisphosphate kinase 1 to discriminate between symmetric and enantiomeric substrates in the production of diverse symmetric and asymmetric myo-inositol phosphate and diphospho-myo-inositol phosphate (inositol pyrophosphate) products. Simple tools are applied to chromatographic resolution and detection of known and novel diphosphoinositol phosphates without resort to radiolabeling approaches. It is shown that inositol tris/tetrakisphosphate kinase 1 and inositol pentakisphosphate 2-kinase comprise a reversible metabolic cassette converting Ins(3,4,5,6)P4 into 5-InsP7 and back in a nucleotide-dependent manner. Thus, inositol tris/tetrakisphosphate kinase 1 is a nexus of bioenergetics status and inositol polyphosphate/diphosphoinositol phosphate metabolism. As such, it commands a role in plants that evolution has assigned to a different class of enzyme in mammalian cells. The findings and the methods described will enable a full appraisal of the role of diphosphoinositol phosphates in plants and particularly the relative contribution of reversible inositol phosphate hydroxykinase and inositol phosphate phosphokinase activities to plant physiology.

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Journal ArticleDOI

Analysis of inositol phosphate metabolism by capillary electrophoresis electrospray ionization mass spectrometry.

TL;DR: Capillary electrophoresis coupled to electrospray ionization mass spectrometry (ESI-MS) is implemented to analyze complex mixtures of InsPs and PP-InsPs with high sensitivity, providing evidence for the existence of unknown inositol synthesis pathways in mammals and highlighting the potential of this method to dissect inositl phosphate metabolism and signalling.
Journal ArticleDOI

Intracellular phosphate sensing and regulation of phosphate transport systems in plants

TL;DR: This review has integrated prior established knowledge of Pi and PP-InsP metabolism, intracellular Pi sensing, and transcriptional responses according to the dynamics of cellular Pi status in plants.
Journal ArticleDOI

Inositol phosphate kinases in the eukaryote landscape.

TL;DR: In this article, an evolutionary approach to understand the development of the "inositol phosphate code" in eukaryotes was presented, which revealed the loss of either ITPK, or of PPIP5K proteins in several species.
Posted ContentDOI

Arabidopsis inositol polyphosphate kinases IPK1 and ITPK1 modulate crosstalks between SA-dependent immunity and phosphate-starvation responses

TL;DR: It is demonstrated that SA is induced in phosphate-deprived plants, however its defense-promoting functions are likely diverted to PSR-supportive roles, and selective InsP-kinases are revealed as crosstalk mediators among diverse signaling networks programming stress-appropriate adaptations.
References
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Journal ArticleDOI

Features and development of Coot.

TL;DR: Coot is a molecular-graphics program designed to assist in the building of protein and other macromolecular models and the current state of development and available features are presented.
Journal ArticleDOI

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

TL;DR: AutoDock Vina achieves an approximately two orders of magnitude speed‐up compared with the molecular docking software previously developed in the lab, while also significantly improving the accuracy of the binding mode predictions, judging by tests on the training set used in AutoDock 4 development.
Journal ArticleDOI

The Phyre2 web portal for protein modeling, prediction and analysis

TL;DR: An updated protocol for Phyre2, which uses advanced remote homology detection methods to build 3D models, predict ligand binding sites and analyze the effect of amino acid variants for a user's protein sequence.
Journal ArticleDOI

The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers.

Daniel E. Atkinson
- 01 Nov 1968 - 
TL;DR: An electrostatic spray apparatus and method for spraying electrically conductive coating materials on a continuous basis from an electrically grounded bulk coating supply.
Journal ArticleDOI

A phospholipase C-dependent inositol polyphosphate kinase pathway required for efficient messenger RNA export.

TL;DR: A genetic screen was conducted with a yeast mutant deficient in a factor Gle1p, which associates with the nuclear pore complex, and the common downstream effects of mutations were deficiencies in IP6 synthesis and messenger RNA export, indicating a role for IP6 in GLE1 function and messengerRNA export.
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