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Open AccessJournal ArticleDOI

Dynamic miRNA Landscape Links Mammary Gland Development to the Regulation of Milk Protein Expression in Mice

TLDR
In this article , microRNA expression profiles in female ICR mice's mammary glands at the virgin stage (V), day 16 of pregnancy (P16d), day 12 of lactation (L12d) and day 1 of forced weaning (FW1d) were analyzed.

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Growth and development of the mammary gland in mice—control of the insulin-like growth factor system by hormones and metalloproteases, and putative interference with micro RNAs

TL;DR: Hoeflich et al. as discussed by the authors described the growth and development of the mammary gland in mice and putative interference with micro RNAs, and showed that the growth factor system was controlled by hormones and metalloproteases.
Journal ArticleDOI

Editorial: Role of Non-Coding RNAs in Animals

Duy Ngoc Do, +1 more
- 23 Feb 2023 - 
TL;DR: The importance of non-coding RNAs (ncRNAs) in gene regulation is increasingly being appreciated in many species as discussed by the authors , such as micro-RNAs (miRNA), long non coding RNAs(lncRNA), and circularRNAs(circRNA).
References
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Journal ArticleDOI

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

TL;DR: Several case studies of Cytoscape plug-ins are surveyed, including a search for interaction pathways correlating with changes in gene expression, a study of protein complexes involved in cellular recovery to DNA damage, inference of a combined physical/functional interaction network for Halobacterium, and an interface to detailed stochastic/kinetic gene regulatory models.
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MicroRNAs: Genomics, Biogenesis, Mechanism, and Function

TL;DR: Although they escaped notice until relatively recently, miRNAs comprise one of the more abundant classes of gene regulatory molecules in multicellular organisms and likely influence the output of many protein-coding genes.
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

TL;DR: Bowtie extends previous Burrows-Wheeler techniques with a novel quality-aware backtracking algorithm that permits mismatches and can be used simultaneously to achieve even greater alignment speeds.
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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

TL;DR: An R package, clusterProfiler that automates the process of biological-term classification and the enrichment analysis of gene clusters and can be easily extended to other species and ontologies is presented.
Journal ArticleDOI

Predicting effective microRNA target sites in mammalian mRNAs

TL;DR: It is shown that recently reported non-canonical sites do not mediate repression despite binding the miRNA, which indicates that the vast majority of functional sites are canonical.
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