Journal ArticleDOI
Epitypification of Colletotrichum musae, the causative agent of banana anthracnose
Yuan-Ying Su,Parinn Noireung,Fang Liu,Kevin D. Hyde,Mohamed A. Moslem,Ali H. Bahkali,Kamel A. Abd-Elsalam,Lei Cai +7 more
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TLDR
Multilocus phylogenetic analysis indicates that C. musae clusters in a distinct lineage in the “gloeosporioides” species complex and is most closely related to Colletotrichum fructicola.About:
This article is published in Mycoscience.The article was published on 2011-05-11. It has received 57 citations till now. The article focuses on the topics: Colletotrichum musae.read more
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The Colletotrichum gloeosporioides species complex
TL;DR: The limit of the Colletotrichum gloeosporioides species complex is defined genetically, based on a strongly supported clade within the Col letteredum ITS gene tree, as well as all taxa accepted within this clade, as it has been applied in the literature for the past 50 years.
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Colletotrichum - current status and future directions.
TL;DR: A review is provided of the current state of understanding of Colletotrichum systematics, focusing on species-level data and the major clades, and the taxonomic placement of the genus is discussed.
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The Colletotrichum acutatum species complex
TL;DR: Multilocus molecular phylogenetic analysis of 331 strains previously identified as C. acutatum and other related taxa, including strains from numerous hosts with wide geographic distributions, confirmed the molecular groups previously recognised and identified a series of novel taxa.
Journal ArticleDOI
Towards a natural classification and backbone tree for Sordariomycetes
Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,E. B. Gareth Jones,Eric H. C. McKenzie,Shi-Ke Huang,Shi-Ke Huang,Mohamed A. Abdel-Wahab,Dinushani A. Daranagama,Monika C. Dayarathne,Melvina J. D’souza,Ishani D. Goonasekara,Sinang Hongsanan,Ruvishika S. Jayawardena,Paul M. Kirk,Sirinapa Konta,Jian-Kui Liu,Jian-Kui Liu,Zuo-Yi Liu,Chada Norphanphoun,Ka-Lai Pang,Rekhani H. Perera,Indunil C. Senanayake,Qiu-Ju Shang,Belle Damodara Shenoy,Yuan-Pin Xiao,Yuan-Pin Xiao,Ali H. Bahkali,Ji-Chuan Kang,Sayanh Somrothipol,Satinee Suetrong,Ting-Chi Wen,Jianchu Xu,Jianchu Xu +33 more
TL;DR: An updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class are provided and new links between sexual and asexual genera and thus synonymies are provided.
Journal ArticleDOI
One stop shop: backbones trees for important phytopathogenic genera: I (2014)
Kevin D. Hyde,R. Henrik Nilsson,S. Aisyah Alias,Hiran A. Ariyawansa,Jaime E. Blair,Lei Cai,Arthur W. A. M. de Cock,Asha J. Dissanayake,Sally L. Glockling,Ishani D. Goonasekara,Michał Gorczak,Matthias Hahn,Ruvishika S. Jayawardena,Jan A. L. van Kan,Matthew H. Laurence,C. André Lévesque,Xinghong Li,Jian-Kui Liu,Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Dimuthu S. Manamgoda,Frank N. Martin,Eric H. C. McKenzie,Alistair R. McTaggart,Peter E. Mortimer,Peter E. Mortimer,P. V. R. Nair,Julia Pawłowska,Tara L. Rintoul,Roger G. Shivas,Christoffel F.J. Spies,Brett A. Summerell,Paul J. Taylor,Razak B. Terhem,Razak B. Terhem,Dhanushka Udayanga,Niloofar Vaghefi,Grit Walther,Grit Walther,Mateusz Wilk,Marta Wrzosek,Jianchu Xu,Jianchu Xu,Jiye Yan,Nan Zhou +44 more
TL;DR: This study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, BasidiomyCota, Mucormycotina (Fungi), and Oomycota using recent molecular data, up-to-date names, and the latest taxonomic insights.
References
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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
TL;DR: ClUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W, providing an integrated system for performing multiple sequence and profile alignments and analysing the results.
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Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/ nt
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MRBAYES: Bayesian inference of phylogenetic trees
TL;DR: The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo, and an executable is available at http://brahms.rochester.edu/software.html.