Generic concepts in Nectriaceae
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TLDR
A multi-gene phylogenetic analysis using partial sequences for the 28S large subunit (LSU) nrDNA, the internal transcribed spacer region and intervening 5.8S nrRNA gene (ITS) resolved 47 genera in the Nectriaceae, including several genera for which no sequence data was previously available.About:
This article is published in Studies in Mycology.The article was published on 2015-03-01 and is currently open access. It has received 308 citations till now. The article focuses on the topics: Nectriaceae.read more
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Towards a natural classification and backbone tree for Sordariomycetes
Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,E. B. Gareth Jones,Eric H. C. McKenzie,Shi-Ke Huang,Shi-Ke Huang,Mohamed A. Abdel-Wahab,Dinushani A. Daranagama,Monika C. Dayarathne,Melvina J. D’souza,Ishani D. Goonasekara,Sinang Hongsanan,Ruvishika S. Jayawardena,Paul M. Kirk,Sirinapa Konta,Jian-Kui Liu,Jian-Kui Liu,Zuo-Yi Liu,Chada Norphanphoun,Ka-Lai Pang,Rekhani H. Perera,Indunil C. Senanayake,Qiu-Ju Shang,Belle Damodara Shenoy,Yuan-Pin Xiao,Yuan-Pin Xiao,Ali H. Bahkali,Ji-Chuan Kang,Sayanh Somrothipol,Satinee Suetrong,Ting-Chi Wen,Jianchu Xu,Jianchu Xu +33 more
TL;DR: An updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class are provided and new links between sexual and asexual genera and thus synonymies are provided.
Journal ArticleDOI
Families of Sordariomycetes
Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,E. B. Gareth Jones,Eric H. C. McKenzie,Jayarama D. Bhat,Monika C. Dayarathne,Shi Ke Huang,Shi Ke Huang,Chada Norphanphoun,Indunil C. Senanayake,Rekhani H. Perera,Qiu Ju Shang,Yuan-Pin Xiao,Yuan-Pin Xiao,Melvina J. D’souza,Sinang Hongsanan,Ruvishika S. Jayawardena,Dinushani A. Daranagama,Dinushani A. Daranagama,Sirinapa Konta,Ishani D. Goonasekara,Wen Ying Zhuang,Rajesh Jeewon,Alan J. L. Phillips,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Abdullah M. Al-Sadi,Ali H. Bahkali,Saranyaphat Boonmee,Nattawut Boonyuen,Ratchadawan Cheewangkoon,Asha J. Dissanayake,Ji-Chuan Kang,Qi Rui Li,Qi Rui Li,Jian-Kui Liu,Xingzhong Liu,Zuo Yi Liu,J. Jennifer Luangsa-ard,Ka-Lai Pang,Rungtiwa Phookamsak,Itthayakorn Promputtha,Satinee Suetrong,Marc Stadler,Ting-Chi Wen,Nalin N. Wijayawardene +46 more
TL;DR: This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci, with a maximum five representative taxa from each family, where available.
Journal ArticleDOI
Notes for genera: Ascomycota
Nalin N. Wijayawardene,Kevin D. Hyde,Kunhiraman C. Rajeshkumar,David L. Hawksworth,Hugo Madrid,Paul M. Kirk,Uwe Braun,Rajshree V. Singh,Pedro W. Crous,Martin Kukwa,Robert Lücking,Cletus P. Kurtzman,Andrey Yurkov,Danny Haelewaters,André Aptroot,H. Thorsten Lumbsch,Einar Timdal,Damien Ertz,Javier Etayo,Alan J. L. Phillips,Johannes Z. Groenewald,Moslem Papizadeh,Laura Selbmann,Monika C. Dayarathne,Gothamie Weerakoon,E. B. Gareth Jones,Satinee Suetrong,Qing Tian,Rafael F. Castañeda-Ruiz,Ali H. Bahkali,Ka-Lai Pang,Kazuaki Tanaka,Dong-Qin Dai,Jariya Sakayaroj,Martina Hujslová,Lorenzo Lombard,Belle Damodara Shenoy,Ave Suija,Sajeewa S. N. Maharachchikumbura,Kasun M. Thambugala,Dhanushka N. Wanasinghe,Bharati O. Sharma,Subhash Gaikwad,Gargee Pandit,Laura Zucconi,Silvano Onofri,Eleonora Egidi,Huzefa A. Raja,Rampai Kodsueb,Marcela Eugenia da Silva Cáceres,Sergio Pérez-Ortega,Patrícia Oliveira Fiuza,Josiane Santana Monteiro,Larissa N. Vasilyeva,Roger G. Shivas,María Prieto,Mats Wedin,Ibai Olariaga,A. A. Lateef,Yamini Agrawal,Seyed Abolhassan Shahzadeh Fazeli,Mohammad Ali Amoozegar,Guo Zhu Zhao,Walter P. Pfliegler,Gunjan Sharma,Magdalena Oset,Mohamed A. Abdel-Wahab,Susumu Takamatsu,K. Bensch,Nimali I. de Silva,André De Kesel,Anuruddha Karunarathna,Saranyaphat Boonmee,Donald H. Pfister,Yong-Zhong Lu,Zong-Long Luo,Nattawut Boonyuen,Dinushani A. Daranagama,Indunil C. Senanayake,Subashini C. Jayasiri,Milan C. Samarakoon,Xiang-Yu Zeng,Mingkwan Doilom,Luis Quijada,Sillma Rampadarath,Gabriela Heredia,Asha J. Dissanayake,Ruvishika S. Jayawardana,Rekhani H. Perera,Li Zhou Tang,Chayanard Phukhamsakda,Margarita Hernández-Restrepo,Xiao-Ya Ma,Saowaluck Tibpromma,Luís Fernando Pascholati Gusmão,Darshani Weerahewa,Samantha C. Karunarathna +96 more
TL;DR: This work is intended to provide the foundation for updating the ascomycete component of the “Without prejudice list of generic names of Fungi” published in 2013, which will be developed into a list of protected generic names.
Journal ArticleDOI
DNA sequence-based identification of Fusarium : Current status and future directions
TL;DR: This mini-review is to provide a contemporary guide to the following three web-accessible resources for DNA sequence-based identifications of Fusarium : FUSARIUM-ID (http://isolate.fusariumdb.org/; Geiser et al. 2004; Park and O’Donnell 2010; and NCBI GenBank ( http://www.ncbi.nlm.nih.gov/).
Journal ArticleDOI
Refined families of Sordariomycetes
TL;DR: This treatment of the class Sordariomycetes provides up-to-date DNA based phylogenies for 45 orders and 163 families and provides general descriptions and illustrate the type genus or another genus, where the placement has generally been confirmed with molecular data.
References
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
TL;DR: An advanced version of the Molecular Evolutionary Genetics Analysis software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, is released, which enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny.
Brief Communication MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
TL;DR: The Molecular Evolutionary Genetics Analysis (MEGA) software as discussed by the authors provides facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, including the inference of timetrees.
Journal ArticleDOI
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh,Daron M. Standley +1 more
TL;DR: This version of MAFFT has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update.
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh,Daron M. Standley +1 more