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Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA.

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TLDR
The presented results provide first evidence that UdhA restores the cellular redox balance by catalyzing electron transfer from NADPH to NADH.
Abstract
Blocking glycolytic breakdown of glucose by inactivation of phosphoglucose isomerase (Pgi) in Escherichia coli led to a greatly reduced maximum specific growth rate. Examination of the operational catabolic pathways and their flux ratios using [U-13C6]glucose-labeling experiments and metabolic flux ratio analysis provide evidence for the pentose phosphate (PP) pathway as the primary route of glucose catabolism in the knock-out mutant. The resulting extensive flux through the PP pathway disturbs apparently the reducing power balance, since overexpression of the recently identified soluble transhydrogenase UdhA improves significantly the growth rate of the Pgi mutant. The presented results provide first evidence that UdhA restores the cellular redox balance by catalyzing electron transfer from NADPH to NADH.

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Sortilin is essential for proNGF-induced neuronal cell death

TL;DR: It is reported that proNGF creates a signalling complex by simultaneously binding to p 75NTR and sortilin, which acts as a co-receptor and molecular switch governing the p75NTR-mediated pro-apoptotic signal induced by proNGf.
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Metabolic network structure determines key aspects of functionality and regulation

TL;DR: A theoretical method for simultaneously predicting key aspects of network functionality, robustness and gene regulation from network structure alone is devised by determining and analysing the non-decomposable pathways able to operate coherently at steady state (elementary flux modes).
Journal ArticleDOI

Global Organization of Metabolic Fluxes in the Bacterium Escherichia coli

TL;DR: A flux balance analysis of the metabolism of Escherichia coli strain MG1655 shows that network use is highly uneven, which probably represents a universal feature of metabolic activity in all cells, with potential implications for metabolic engineering.
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The Soluble and Membrane-bound Transhydrogenases UdhA and PntAB Have Divergent Functions in NADPH Metabolism of Escherichia coli*

TL;DR: Both transhydrogenase isoforms in E. coli have divergent physiological functions: energy-dependent reduction of NADP+ with NADH by PntAB and reoxidation of NADPH by UdhA, which raises two general questions: why do only a few bacteria contain both isoforms, and how do other organisms manage NADPH metabolism?
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Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC‐MS

TL;DR: A novel methodology for rapid diagnosis of metabolic changes, which is based on probabilistic equations that relate GC-MS-derived mass distributions in proteinogenic amino acids to in vivo enzyme activities is described, providing quantitative insight into flux changes that bring about the resilience of metabolic networks to disruption.
References
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Journal ArticleDOI

13C metabolic flux analysis.

TL;DR: This minireview summarizes recent developments of metabolic flux analysis using 13C-labeled substrates and sketches the major practical problems.
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Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism.

TL;DR: Data indicate remarkable robustness and rigidity in central carbon metabolism in the presence of genetic variation and more significant physiological changes and flux ratio differences were seen in response to altered environmental conditions.
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Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism.

TL;DR: Biosynthetically directed fractional 13C labeling of amino acids provides an efficient analytical tool to quantitatively investigate glycolysis, pyruvate metabolism, pentose phosphate pathway, tricarboxylic acid cycle and C1 metabolism.
Journal ArticleDOI

Biosynthetically Directed Fractional 13C-labeling of Proteinogenic Amino Acids

TL;DR: Biosynthetically directed fractional 13C labeling of amino acids provides an efficient analytical tool to quantitatively investigate glycolysis, pyruvate metabolism, pentose phosphate pathway, tricarboxylic acid cycle and C1 metabolism.
Journal ArticleDOI

Metabolic fluxes in riboflavin-producing Bacillus subtilis

TL;DR: The pentose phosphate pathway and the pyruvate shunt were identified as major pathways of glucose catabolism in a recombinant, riboflavin-producing Bacillus subtilis strain, and the overall flux distribution suggests that B. subtilIS metabolism has an unusually high capacity for the reoxidation of NADPH.
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