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Real-time PCR detection and phylogenetic relationships of Neorickettsia spp. in digeneans from Egypt, Philippines, Thailand, Vietnam and the United States

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TLDR
For the first time detected Neorickettsia in a digenean from Egypt, the African continent as a whole, the Philippines, Thailand and Vietnam based on PCR and sequencing evidence, these findings suggest that further surveys from theAfrican continent, SE Asia, and island countries are likely to reveal new NeorICKettsia lineages as well as new digenea host associations.
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This article is published in Parasitology International.The article was published on 2017-02-01 and is currently open access. It has received 12 citations till now. The article focuses on the topics: Neorickettsia & Anaplasmataceae.

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Transcriptomic responses of Biomphalaria pfeifferi to Schistosoma mansoni: Investigation of a neglected African snail that supports more S. mansoni transmission than any other snail species

TL;DR: This study provides for the first time a large sequence data set to help in interpreting the important vector role of the neglected snail B. pfeifferi in transmission of S. mansoni, including with an emphasis on more natural, field-derived specimens.
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An overview of rickettsiae in Southeast Asia: Vector-animal-human interface.

TL;DR: This review summarizes the infections of rickettsiae, including the newly discovered regional species Rickettsia thailandii, and other novel genotypes in vectors, humans and animals in Southeast Asia.
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Metagenomic shotgun sequencing reveals host species as an important driver of virome composition in mosquitoes

TL;DR: In this paper, the relative importance of host species and habitat in structuring virus communities was investigated, and the authors found that the pattern of virus presence was defined primarily by host species rather than by geographic locations or habitats.
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Isolation and Molecular Analysis of a Novel Neorickettsia Species That Causes Potomac Horse Fever.

TL;DR: The cell culture isolation of a new Neorickettsia species found in two locations in eastern Ontario, Canada, in 2016 and 2017 had the characteristic intramolecular repeats within strain-specific antigen 3 (Ssa3), which were found in all sequenced Ssa3s of N. risticii strains.
References
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Journal ArticleDOI

MRBAYES: Bayesian inference of phylogenetic trees

TL;DR: The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo, and an executable is available at http://brahms.rochester.edu/software.html.
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A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

TL;DR: This work has used extensive and realistic computer simulations to show that the topological accuracy of this new method is at least as high as that of the existing maximum-likelihood programs and much higher than the performance of distance-based and parsimony approaches.
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jModelTest: Phylogenetic Model Averaging

TL;DR: jModelTest is a new program for the statistical selection of models of nucleotide substitution based on "Phyml" that implements 5 different selection strategies, including "hierarchical and dynamical likelihood ratio tests," the "Akaike information criterion", the "Bayesian information criterion," and a "decision-theoretic performance-based" approach.
Journal Article

MRBAYES: Bayesian inference of phylogeny

J.P. Huelsenbeck, +1 more
- 01 Jan 2001 - 
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