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Open AccessJournal ArticleDOI

Recombinant Surface Proteomics as a Tool to Analyze Humoral Immune Responses in Bovines Infected by Mycoplasma mycoides Subsp. mycoides Small Colony Type

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TLDR
A toolbox with recombinant proteins and a flexible suspension array assay that allows multiplex analysis of humoral immune responses to M. mycoides SC has been created.
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This article is published in Molecular & Cellular Proteomics.The article was published on 2009-11-01 and is currently open access. It has received 23 citations till now. The article focuses on the topics: Mycoplasma mycoides.

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Autoantibody Profiling in Multiple Sclerosis Using Arrays of Human Protein Fragments

TL;DR: Using protein fragments and complementary high-throughput protein array platforms facilitated an alternative route to discovery and verification of potentially disease-associated autoimmunity signatures, that are now proposed as additional antigens for large-scale validation studies across multiple sclerosis biobanks.
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Development of an improved vaccine for contagious bovine pleuropneumonia: an African perspective on challenges and proposed actions

TL;DR: It is suggested that different vaccine development approaches are followed in parallel and basic immunology studies and systematic OMICs studies will be necessary in order to identify the protective arms of immunity and to shed more light on the pathogenicity mechanisms in CBPP.
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Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment.

TL;DR: It is suggested that plasma levels of fibulin-1 could serve as a potential indicator to monitor kidney malfunction or kidney damage.
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A Lateral Flow Protein Microarray for Rapid and Sensitive Antibody Assays

TL;DR: It is proposed that the presented framework could find use in convenient and cost-efficient quality control of antibody production, as well as in providing a platform for multiplexed affinity-based assays in low-resource or mobile settings.
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Specific Evolution of F1-Like ATPases in Mycoplasmas

TL;DR: A model, in which the F1-like structure is associated with a hypothetical X0 sector located in the membrane of mycoplasma cells, is proposed, which suggests that Type 3 ATPase clusters may spread to other phylogenetic groups by horizontal gene transfer between my coplasmas in the same host, based on phylogeny and genomic context.
References
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Journal ArticleDOI

Basic Local Alignment Search Tool

TL;DR: A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score.
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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

TL;DR: A new membrane protein topology prediction method, TMHMM, based on a hidden Markov model is described and validated, and it is discovered that proteins with N(in)-C(in) topologies are strongly preferred in all examined organisms, except Caenorhabditis elegans, where the large number of 7TM receptors increases the counts for N(out)-C-in topologies.
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R: A Language for Data Analysis and Graphics

TL;DR: In this article, the authors discuss their experience designing and implementing a statistical computing language, which combines what they felt were useful features from two existing computer languages, and they feel that the new language provides advantages in the areas of portability, computational efficiency, memory management, and scope.
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Improved Prediction of Signal Peptides: SignalP 3.0

TL;DR: Improvements of the currently most popular method for prediction of classically secreted proteins, SignalP, which consists of two different predictors based on neural network and hidden Markov model algorithms, where both components have been updated.
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Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

TL;DR: A new method for the identification of signal peptides and their cleavage sites based on neural networks trained on separate sets of prokaryotic and eukaryotic sequence that performs significantly better than previous prediction schemes and can easily be applied on genome-wide data sets.
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