Basic Local Alignment Search Tool
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Cites methods from "Basic Local Alignment Search Tool"
...UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets....
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"Basic Local Alignment Search Tool" refers background in this paper
...…• combined with phylogenetic studies o can determine orthologous and paralogous relationships Local Alignment • uses a subset of a sequence and attempts to align it to subset of other sequences • computationally less expensive than other methods Local Alignment Example • a small seed is uncovered...
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...TAT ||| AAGCGAATAATATATTTATACTCAGATTATTGCGCG • And now the extended alignment: TATATATTAGTA ||||||||| || AAGCGAATAATATATTTATACTCAGATTATTGCGCG...
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