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Robust Non-rigid Registration Through Agent-Based Action Learning

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TLDR
This paper investigates in this paper how DL could help organ-specific (ROI-specific) deformable registration, to solve motion compensation or atlas-based segmentation problems for instance in prostate diagnosis and presents a training scheme with a large number of synthetically deformed image pairs requiring only a small number of real inter-subject pairs.
Abstract
Robust image registration in medical imaging is essential for comparison or fusion of images, acquired from various perspectives, modalities or at different times. Typically, an objective function needs to be minimized assuming specific a priori deformation models and predefined or learned similarity measures. However, these approaches have difficulties to cope with large deformations or a large variability in appearance. Using modern deep learning (DL) methods with automated feature design, these limitations could be resolved by learning the intrinsic mapping solely from experience. We investigate in this paper how DL could help organ-specific (ROI-specific) deformable registration, to solve motion compensation or atlas-based segmentation problems for instance in prostate diagnosis. An artificial agent is trained to solve the task of non-rigid registration by exploring the parametric space of a statistical deformation model built from training data. Since it is difficult to extract trustworthy ground-truth deformation fields, we present a training scheme with a large number of synthetically deformed image pairs requiring only a small number of real inter-subject pairs. Our approach was tested on inter-subject registration of prostate MR data and reached a median DICE score of .88 in 2-D and .76 in 3-D, therefore showing improved results compared to state-of-the-art registration algorithms.

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Citations
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Journal ArticleDOI

VoxelMorph: A Learning Framework for Deformable Medical Image Registration

TL;DR: VoxelMorph promises to speed up medical image analysis and processing pipelines while facilitating novel directions in learning-based registration and its applications and demonstrates that the unsupervised model’s accuracy is comparable to the state-of-the-art methods while operating orders of magnitude faster.
Proceedings ArticleDOI

An Unsupervised Learning Model for Deformable Medical Image Registration

TL;DR: The proposed method uses a spatial transform layer to reconstruct one image from another while imposing smoothness constraints on the registration field, and demonstrates registration accuracy comparable to state-of-the-art 3D image registration, while operating orders of magnitude faster in practice.
Journal ArticleDOI

A deep learning framework for unsupervised affine and deformable image registration

TL;DR: In this paper, the Deep Learning Image Registration (DLIR) framework is proposed for unsupervised affine and deformable image registration, where CNNs are trained for image registration by exploiting image similarity analogous to conventional intensity-based image registration.
Journal ArticleDOI

VoxelMorph: A Learning Framework for Deformable Medical Image Registration

TL;DR: Zhou et al. as mentioned in this paper proposed VoxelMorph, a fast learning-based framework for deformable, pairwise medical image registration, which parameterizes the function via a convolutional neural network and optimizes the parameters of the neural network on a set of images.
Journal ArticleDOI

Image Matching from Handcrafted to Deep Features: A Survey

TL;DR: This survey introduces feature detection, description, and matching techniques from handcrafted methods to trainable ones and provides an analysis of the development of these methods in theory and practice, and briefly introduces several typical image matching-based applications.
References
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FlowNet: Learning Optical Flow with Convolutional Networks

TL;DR: In this paper, the authors propose and compare two architectures: a generic architecture and another one including a layer that correlates feature vectors at different image locations, and show that networks trained on this unrealistic data still generalize very well to existing datasets such as Sintel and KITTI.
Journal ArticleDOI

elastix : A Toolbox for Intensity-Based Medical Image Registration

TL;DR: The software consists of a collection of algorithms that are commonly used to solve medical image registration problems, and allows the user to quickly configure, test, and compare different registration methods for a specific application.
Posted Content

FlowNet: Learning Optical Flow with Convolutional Networks

TL;DR: This paper constructs CNNs which are capable of solving the optical flow estimation problem as a supervised learning task, and proposes and compares two architectures: a generic architecture and another one including a layer that correlates feature vectors at different image locations.
Journal ArticleDOI

Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration

TL;DR: This paper shows how the concept of statistical deformation models (SDMs) can be used for the construction of average models of the anatomy and their variability and demonstrates that SDMs can be constructed so as to minimize the bias toward the chosen reference subject.
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