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Open AccessJournal ArticleDOI

Source partitioning using stable isotopes: coping with too much variation.

TLDR
This work outlines a framework that builds on recently published Bayesian isotopic mixing models and presents a new open source R package, SIAR, to allow for continued and rapid development of this core model into an all-encompassing single analysis suite for stable isotope research.
Abstract
Background Stable isotope analysis is increasingly being utilised across broad areas of ecology and biology. Key to much of this work is the use of mixing models to estimate the proportion of sources contributing to a mixture such as in diet estimation. Methodology By accurately reflecting natural variation and uncertainty to generate robust probability estimates of source proportions, the application of Bayesian methods to stable isotope mixing models promises to enable researchers to address an array of new questions, and approach current questions with greater insight and honesty. Conclusions We outline a framework that builds on recently published Bayesian isotopic mixing models and present a new open source R package, SIAR. The formulation in R will allow for continued and rapid development of this core model into an all-encompassing single analysis suite for stable isotope research.

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Journal ArticleDOI

Comparing isotopic niche widths among and within communities: SIBER - Stable Isotope Bayesian Ellipses in R.

TL;DR: The ellipses are unbiased with respect to sample size, and their estimation via Bayesian inference allows robust comparison to be made among data sets comprising different sample sizes, which opens up more avenues for direct comparison of isotopic niches across communities.
Journal ArticleDOI

Applying stable isotopes to examine food‐web structure: an overview of analytical tools

TL;DR: A comprehensive review of stable isotope analysis techniques, and a set of suggestions that transcend individual analytical approaches, are provided to help identify the most useful approaches to apply to a given data set.
Journal ArticleDOI

On the Use of Stable Isotopes in Trophic Ecology

TL;DR: This work expects progress in SIA resulting from standardization of methods and models, calibration of model parameters through experimentation, andContinuing to be a useful tool in reconstructing diets, characterizing trophic relationships, elucidating patterns of resource allocation, and constructing food webs.
Posted Content

Bayesian Stable Isotope Mixing Models

TL;DR: In this article, stable isotope mixing models (SIMMs) are used to quantify the proportional contributions of various sources to a mixture, and a compositional component of the model is based on the isometric log ratio (ilr) transform of Egozcue (2003).
References
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Journal ArticleDOI

Source partitioning using stable isotopes: coping with too many sources.

TL;DR: This method is applied to a variety of environmental studies in which stable isotope tracers were used to quantify the relative magnitude of multiple sources, including plant water use, geochemistry, air pollution, and dietary analysis and gives the range of isotopically determined source contributions.
Journal ArticleDOI

Sources of variation in consumer-diet δ15N enrichment: a meta-analysis

TL;DR: Overall, the analyses point to several important sources of variation in δ15N enrichment and suggest that the most important of them are the main biochemical form of nitrogen excretion and nutritional status.
Journal ArticleDOI

Can stable isotope ratios provide for community-wide measures of trophic structure?

TL;DR: Building from extensive applications of stable isotope ratios by ecologists, the community-wide metrics may provide a new perspective on food web structure, function, and dynamics.
Journal ArticleDOI

Determining trophic niche width: a novel approach using stable isotope analysis

TL;DR: This approach is a potentially powerful method of measuring trophic niche width, particularly if combined with conventional approaches, because it provides a single measure on a continuous axis that is common to all species; it integrates information on only assimilated prey over time; and data production is theoretically fast and testing among populations simple.
Journal ArticleDOI

A niche for isotopic ecology

TL;DR: To make isotopic measurements comparable to other niche formulations, this work proposes transforming δ-space to p-space, where axes represent relative proportions of isotopically distinct resources incorporated into an animal's tissues.
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