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The ground truth about metadata and community detection in networks

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TLDR
It is proved that no algorithm can uniquely solve community detection, and a general No Free Lunch theorem for community detection is proved, which implies that there can be no algorithm that is optimal for all possible community detection tasks.
Abstract
Across many scientific domains, there is a common need to automatically extract a simplified view or coarse-graining of how a complex system's components interact. This general task is called community detection in networks and is analogous to searching for clusters in independent vector data. It is common to evaluate the performance of community detection algorithms by their ability to find so-called ground truth communities. This works well in synthetic networks with planted communities because these networks' links are formed explicitly based on those known communities. However, there are no planted communities in real-world networks. Instead, it is standard practice to treat some observed discrete-valued node attributes, or metadata, as ground truth. We show that metadata are not the same as ground truth and that treating them as such induces severe theoretical and practical problems. We prove that no algorithm can uniquely solve community detection, and we prove a general No Free Lunch theorem for community detection, which implies that there can be no algorithm that is optimal for all possible community detection tasks. However, community detection remains a powerful tool and node metadata still have value, so a careful exploration of their relationship with network structure can yield insights of genuine worth. We illustrate this point by introducing two statistical techniques that can quantify the relationship between metadata and community structure for a broad class of models. We demonstrate these techniques using both synthetic and real-world networks, and for multiple types of metadata and community structures.

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Citations
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Journal ArticleDOI

Community detection in networks by dynamical optimal transport formulation

TL;DR: In this paper , an OT-based approach that exploits recent advances in OT theory to allow tuning between different transportation regimes is presented, which allows for better control of the information shared between nodes' neighborhoods.
Journal ArticleDOI

Normalized mutual information is a biased measure for classification and community detection

TL;DR: In this article , a modified version of the mutual information is proposed to remedy the bias of the traditional mutual information. But the modified mutual information still ignores the information content of the contingency table and introduces a spurious dependence on algorithm output.
Journal ArticleDOI

Edge Augmentation on Disconnected Graphs via Eigenvalue Elevation

Tianyi Li
- 12 Jul 2022 - 
TL;DR: In this article , a graph-theoretical task of determining most likely inter-community edges based on disconnected subgraphs' intra-community connectivity is proposed, and an algorithm is developed for this edge augmentation task, based on elevating the zero eigenvalues of graph's spectrum.
Journal ArticleDOI

Explainability in Graph Data Science: Interpretability, replicability, and reproducibility of community detection

TL;DR: Inspired by recent advances in explainable artificial intelligence (AI) and ML, methods and metrics from network science are presented to quantify three different aspects of explainability, i.e., interpretability, replicability, and reproducibility, in the context of community detection.
Journal ArticleDOI

Resolution limit revisited: community detection using generalized modularity density

TL;DR: In this paper , generalized modularity density (Q g ) is proposed to solve the resolution limit (RL) problem in community detection by considering variants of modularity in the detection algorithms and has a tunable parameter χ that enables structure to be resolved at any desired scale.
References
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Journal ArticleDOI

Community structure in social and biological networks

TL;DR: This article proposes a method for detecting communities, built around the idea of using centrality indices to find community boundaries, and tests it on computer-generated and real-world graphs whose community structure is already known and finds that the method detects this known structure with high sensitivity and reliability.
Journal ArticleDOI

Normalized cuts and image segmentation

TL;DR: This work treats image segmentation as a graph partitioning problem and proposes a novel global criterion, the normalized cut, for segmenting the graph, which measures both the total dissimilarity between the different groups as well as the total similarity within the groups.
Proceedings ArticleDOI

Normalized cuts and image segmentation

TL;DR: This work treats image segmentation as a graph partitioning problem and proposes a novel global criterion, the normalized cut, for segmenting the graph, which measures both the total dissimilarity between the different groups as well as the total similarity within the groups.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of community structure, or clustering, is attempted, from the definition of the main elements of the problem, to the presentation of most methods developed, with a special focus on techniques designed by statistical physicists.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of the main elements of the clustering problem can be found in this paper, with a special focus on techniques designed by statistical physicists, from the discussion of crucial issues like the significance of clustering and how methods should be tested and compared against each other, to the description of applications to real networks.
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