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The ground truth about metadata and community detection in networks

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TLDR
It is proved that no algorithm can uniquely solve community detection, and a general No Free Lunch theorem for community detection is proved, which implies that there can be no algorithm that is optimal for all possible community detection tasks.
Abstract
Across many scientific domains, there is a common need to automatically extract a simplified view or coarse-graining of how a complex system's components interact. This general task is called community detection in networks and is analogous to searching for clusters in independent vector data. It is common to evaluate the performance of community detection algorithms by their ability to find so-called ground truth communities. This works well in synthetic networks with planted communities because these networks' links are formed explicitly based on those known communities. However, there are no planted communities in real-world networks. Instead, it is standard practice to treat some observed discrete-valued node attributes, or metadata, as ground truth. We show that metadata are not the same as ground truth and that treating them as such induces severe theoretical and practical problems. We prove that no algorithm can uniquely solve community detection, and we prove a general No Free Lunch theorem for community detection, which implies that there can be no algorithm that is optimal for all possible community detection tasks. However, community detection remains a powerful tool and node metadata still have value, so a careful exploration of their relationship with network structure can yield insights of genuine worth. We illustrate this point by introducing two statistical techniques that can quantify the relationship between metadata and community structure for a broad class of models. We demonstrate these techniques using both synthetic and real-world networks, and for multiple types of metadata and community structures.

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Citations
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Journal ArticleDOI

Community detection with node attributes in multilayer networks

TL;DR: This work develops a principled probabilistic method that does not assume any a priori correlation structure between attributes and communities but rather infers this from data, which leads to an efficient algorithmic implementation that exploits the sparsity of the dataset and can be used to perform several inference tasks.
Journal ArticleDOI

Stochastic block models with multiple continuous attributes

TL;DR: This model is the first augmented stochastic block model to handle multiple continuous attributes and provides the flexibility in biological data to, for example, augment connectivity information with continuous measurements from multiple experimental modalities.
Journal ArticleDOI

Measuring Node Contribution to Community Structure With Modularity Vitality

TL;DR: In this paper, a community-aware centrality measure called modularity vitality is proposed, which quantifies positive and negative contributions to community structure, which indicate a node's role as a community bridge or hub.
Journal ArticleDOI

Community structure: A comparative evaluation of community detection methods

TL;DR: This paper provides comprehensive analyses on computation time, community size distribution, a comparative evaluation of methods according to their optimization schemes as well as a comparison of their partitioning strategy through validation metrics, and proposes ways to classify community detection methods.
Journal ArticleDOI

Using text analysis to quantify the similarity and evolution of scientific disciplines.

TL;DR: In this paper, an information-theoretic measure of linguistic similarity is used to investigate the organization and evolution of scientific fields, and an analysis of almost 20 million papers from the past three decades reveals that the linguistic similarity of scientists is related but different from experts and citation-based classifications, leading to an improved view on the organization of science.
References
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Journal ArticleDOI

Community structure in social and biological networks

TL;DR: This article proposes a method for detecting communities, built around the idea of using centrality indices to find community boundaries, and tests it on computer-generated and real-world graphs whose community structure is already known and finds that the method detects this known structure with high sensitivity and reliability.
Journal ArticleDOI

Normalized cuts and image segmentation

TL;DR: This work treats image segmentation as a graph partitioning problem and proposes a novel global criterion, the normalized cut, for segmenting the graph, which measures both the total dissimilarity between the different groups as well as the total similarity within the groups.
Proceedings ArticleDOI

Normalized cuts and image segmentation

TL;DR: This work treats image segmentation as a graph partitioning problem and proposes a novel global criterion, the normalized cut, for segmenting the graph, which measures both the total dissimilarity between the different groups as well as the total similarity within the groups.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of community structure, or clustering, is attempted, from the definition of the main elements of the problem, to the presentation of most methods developed, with a special focus on techniques designed by statistical physicists.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of the main elements of the clustering problem can be found in this paper, with a special focus on techniques designed by statistical physicists, from the discussion of crucial issues like the significance of clustering and how methods should be tested and compared against each other, to the description of applications to real networks.
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