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Journal ArticleDOI

Water–methanol mixtures: topology of hydrogen bonded network

TLDR
It has been found that more methanol molecules are connected to non-cyclic entities, while more water molecules form rings that might have been predicted on the basis of the stoichiometry of the mixtures.
Abstract
Molecular dynamics simulation has been performed to study the structure of water–methanol mixtures. Besides the evaluation of partial radial distribution functions describing the hydrogen-bonded structure of the mixtures with different composition, the statistical analysis of configurations was introduced resulting in a new insight in the clustering properties and topology of hydrogen-bonded network. The results have shown that mixtures of methanol and water exhibit extended structures in solution. At low methanol concentration the water molecules form a percolated network, the methanol molecules are incorporated as monomers or short chains and together form a percolated system. In methanol-rich mixtures short water chains and longer methanol chains build up the hydrogen-bonded clusters in the system. On the basis of the statistical analysis of configurations obtained from molecular dynamics simulation it has been found that more methanol molecules are connected to non-cyclic entities, while more water molecules form rings that might have been predicted on the basis of the stoichiometry of the mixtures. This finding can be explained by the presence of microscopic configurational inhomogeneity in water–methanol mixtures.

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Citations
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Journal ArticleDOI

Physical Properties and Hydrogen-Bonding Network of Water-Ethanol Mixtures from Molecular Dynamics Simulations.

TL;DR: By using a standard force field a good agreement was found between experiment and molecular simulation, which allowed this work to explore the dynamics, structure, and interplay between both hydrogen-bonding networks of water and ethanol.
Journal ArticleDOI

Local Structures of Methanol–Water Binary Solutions Studied by Soft X-ray Absorption Spectroscopy

TL;DR: The concentration dependence of the hydrophobic interaction at the methyl group in the C K-edge XAS spectra shows almost linear concentration dependence, which means the HB interaction between methanol and water is almost the same as that of water-water and of meethanol-methanol.
Journal ArticleDOI

Hydrogen bond network topology in liquid water and methanol: a graph theory approach

TL;DR: It is demonstrated that the topological properties of the hydrogen bond network found in liquid water systematically change with the temperature and that increasing temperature leads to a broader ring size distribution.
Journal ArticleDOI

On the hydrogen bond networks in the water-methanol mixtures: topology, percolation and small-world.

TL;DR: It seems that small quantities of methanol in water cause disruption of the continuous fully connected H-bond networks formed by water molecules.
References
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The missing term in effective pair potentials

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Lethality and centrality in protein networks

TL;DR: It is demonstrated that the phenotypic consequence of a single gene deletion in the yeast Saccharomyces cerevisiae is affected to a large extent by the topological position of its protein product in the complex hierarchical web of molecular interactions.
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