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Alejandra Gonzalez-Beltran
Researcher at Science and Technology Facilities Council
Publications - 80
Citations - 10795
Alejandra Gonzalez-Beltran is an academic researcher from Science and Technology Facilities Council. The author has contributed to research in topics: Metadata & Ontology (information science). The author has an hindex of 23, co-authored 79 publications receiving 7248 citations. Previous affiliations of Alejandra Gonzalez-Beltran include University College London & European Bioinformatics Institute.
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Journal ArticleDOI
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again
Alejandra Gonzalez-Beltran,Steffen Neumann,Eamonn Maguire,Susanna-Assunta Sansone,Philippe Rocca-Serra +4 more
TL;DR: The Risa package is presented, which delivers a central component to support the ISA format by enabling effortless integration with R, the popular, open source data crunching environment.
Journal ArticleDOI
COPO: a metadata platform for brokering FAIR data in the life sciences
Felix Shaw,Anthony Etuk,Alice Minotto,Alejandra Gonzalez-Beltran,Alejandra Gonzalez-Beltran,David Johnson,David Johnson,Philippe Rocca-Serra,Marie-Angélique Laporte,Elizabeth Arnaud,Medha Devare,Paul J. Kersey,Susanna-Assunta Sansone,Robert P. Davey +13 more
TL;DR: COPO is a computational system that attempts to address some of these challenges by enabling scientists to describe their research objects using community-sanctioned metadata sets and vocabularies, and then use public or institutional repositories to share them with the wider scientific community.
Journal ArticleDOI
Interoperable and scalable data analysis with microservices: applications in metabolomics.
Payam Emami Khoonsari,Pablo Moreno,Sven Bergmann,Sven Bergmann,Joachim Burman,Marco Capuccini,Matteo Carone,Marta Cascante,Marta Cascante,Pedro de Atauri,Pedro de Atauri,Carles Foguet,Carles Foguet,Alejandra Gonzalez-Beltran,Thomas Hankemeier,Kenneth Haug,Sijin He,Stephanie Herman,David Johnson,Namrata Kale,Anders Larsson,Steffen Neumann,Kristian Peters,Luca Pireddu,Philippe Rocca-Serra,Pierrick Roger,Rico Rueedi,Rico Rueedi,Christoph Ruttkies,Noureddin Sadawi,Reza M. Salek,Susanna-Assunta Sansone,Daniel Schober,Vitaly A. Selivanov,Vitaly A. Selivanov,Etienne A. Thévenot,Michael van Vliet,Gianluigi Zanetti,Christoph Steinbeck,Christoph Steinbeck,Kim Kultima,Ola Spjuth +41 more
TL;DR: A generic method based on the microservice architecture, where software tools are encapsulated as Docker containers that can be connected into scientific workflows and executed using the Kubernetes container orchestrator is introduced.
Journal ArticleDOI
Federated ontology-based queries over cancer data
TL;DR: An ontology-based solution for querying distributed databases over service-oriented, model-driven infrastructures and an extensive evaluation of the query reformulation technique is included.
Journal ArticleDOI
The health care and life sciences community profile for dataset descriptions.
Michel Dumontier,Alasdair J. G. Gray,M. Scott Marshall,Vladimir Alexiev,Peter Ansell,Gary D. Bader,Joachim Baran,Jerven Bolleman,Alison Callahan,Jose Cruz-Toledo,Pascale Gaudet,Erich Gombocz,Alejandra Gonzalez-Beltran,Paul Groth,Melissa A. Haendel,Maori Ito,Simon Jupp,Nick Juty,Toshiaki Katayama,Norio Kobayashi,Kalpana Krishnaswami,Camille Laibe,Nicolas Le Novère,Simon Lin,James Malone,Michael Miller,Christopher J. Mungall,Laurens Rietveld,Sarala M. Wimalaratne,Atsuko Yamaguchi +29 more
TL;DR: This guideline reuses existing vocabularies, and is intended to meet key functional requirements including indexing, discovery, exchange, query, and retrieval of datasets, thereby enabling the publication of FAIR data.