L
Luca Pireddu
Researcher at Center for Advanced Studies Research and Development in Sardinia
Publications - 50
Citations - 1215
Luca Pireddu is an academic researcher from Center for Advanced Studies Research and Development in Sardinia. The author has contributed to research in topics: Workflow & Scalability. The author has an hindex of 13, co-authored 46 publications receiving 1049 citations. Previous affiliations of Luca Pireddu include University of Alberta & University of Padua.
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Journal ArticleDOI
Genetic variants regulating immune cell levels in health and disease
Valeria Orrù,Maristella Steri,Gabriella Sole,Carlo Sidore,Carlo Sidore,Francesca Virdis,Mariano Dei,Sandra Lai,Magdalena Zoledziewska,Fabio Busonero,Antonella Mulas,Matteo Floris,Wieslawa I. Mentzen,Silvana Anna Maria Urru,Stefania Olla,Michele Marongiu,Maria Grazia Piras,Monia Lobina,Andrea Maschio,Maristella Pitzalis,Maria Francesca Urru,Marco Marcelli,Roberto Cusano,Francesca Deidda,Valentina Serra,Manuela Oppo,Rosella Pilu,Frederic Reinier,Riccardo Berutti,Luca Pireddu,Ilenia Zara,Eleonora Porcu,Alan Kwong,Christine Brennan,Brendan Tarrier,Robert H. Lyons,Hyun Min Kang,Sergio Uzzau,Rossano Atzeni,M. Valentini,Davide Firinu,Lidia Leoni,Gianluca Rotta,Silvia Naitza,Andrea Angius,Mauro Congia,Michael B. Whalen,Chris Jones,David Schlessinger,Gonçalo R. Abecasis,Edoardo Fiorillo,Serena Sanna,Francesco Cucca +52 more
TL;DR: Genetic contributions to quantitative levels of 95 cell types encompassing 272 immune traits, in a cohort of 1,629 individuals from four clustered Sardinian villages are reported, connecting specific cellular phenotypes to specific genetic variants, helping to explicate their involvement in disease.
Journal ArticleDOI
PhenoMeNal: processing and analysis of metabolomics data in the cloud
Kristian Peters,James Bradbury,Sven Bergmann,Sven Bergmann,Marco Capuccini,Marta Cascante,Pedro de Atauri,Timothy M. D. Ebbels,Carles Foguet,Robert C. Glen,Robert C. Glen,Alejandra Gonzalez-Beltran,Ulrich L. Günther,Evangelos Handakas,Thomas Hankemeier,Kenneth Haug,Stephanie Herman,Petr Holub,Massimiliano Izzo,Daniel J. Jacob,David Johnson,David Johnson,Fabien Jourdan,Namrata Kale,Ibrahim Karaman,Bita Khalili,Bita Khalili,Payam Emami Khoonsari,Kim Kultima,Samuel Lampa,Anders Larsson,Christian Ludwig,Pablo Moreno,Steffen Neumann,Jon Ander Novella,Claire O'Donovan,Jake T M Pearce,Alina Peluso,Marco Enrico Piras,Luca Pireddu,Michelle A.C. Reed,Philippe Rocca-Serra,Pierrick Roger,Antonio Rosato,Rico Rueedi,Rico Rueedi,Christoph Ruttkies,Noureddin Sadawi,Noureddin Sadawi,Reza M. Salek,Susanna-Assunta Sansone,Vitaly A. Selivanov,Ola Spjuth,Daniel Schober,Etienne A. Thévenot,Mattia Tomasoni,Mattia Tomasoni,Merlijn van Rijswijk,Michael van Vliet,Mark R. Viant,Ralf J. M. Weber,Gianluigi Zanetti,Christoph Steinbeck +62 more
TL;DR: PhenoMeNal is an advanced and complete solution to set up Infrastructure-as-a-Service (IaaS) that brings workflow-oriented, interoperable metabolomics data analysis platforms into the cloud and constitutes a keystone solution in cloud e-infrastructures available for metabolomics.
Journal ArticleDOI
SEAL: a distributed short read mapping and duplicate removal tool
TL;DR: Seal is a scalable tool for short read pair mapping and duplicate removal that computes mappings that are consistent with those produced by BWA and removes duplicates according to the same criteria employed by Picard MarkDuplicates.
SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop - Supplementary material
André Schumacher,Luca Pireddu,Matti Niemenmaa,Aleksi Kallio,Eija Korpelainen,Gianluigi Zanetti,Keijo Heljanko +6 more
Journal ArticleDOI
SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
André Schumacher,Luca Pireddu,Matti Niemenmaa,Aleksi Kallio,Eija Korpelainen,Gianluigi Zanetti,Keijo Heljanko +6 more
TL;DR: SeqPig is a library and a collection of tools to manipulate, analyze and query sequencing datasets in a scalable and simple manner and uses the Hadoop-based distributed scripting engine Apache Pig, which automatically parallelizes and distributes data processing tasks.