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Alexander J. Sodt

Researcher at National Institutes of Health

Publications -  67
Citations -  7158

Alexander J. Sodt is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Chemistry & Biology. The author has an hindex of 23, co-authored 47 publications receiving 6369 citations. Previous affiliations of Alexander J. Sodt include University of California, Berkeley.

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Advances in methods and algorithms in a modern quantum chemistry program package

TL;DR: Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.
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Advances in molecular quantum chemistry contained in the Q-Chem 4 program package

Yihan Shao, +156 more
- 17 Jan 2015 - 
TL;DR: A summary of the technical advances that are incorporated in the fourth major release of the Q-Chem quantum chemistry program is provided in this paper, covering approximately the last seven years, including developments in density functional theory and algorithms, nuclear magnetic resonance (NMR) property evaluation, coupled cluster and perturbation theories, methods for electronically excited and open-shell species, tools for treating extended environments, algorithms for walking on potential surfaces, analysis tools, energy and electron transfer modelling, parallel computing capabilities, and graphical user interfaces.
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The Molecular Structure of the Liquid-Ordered Phase of Lipid Bilayers

TL;DR: The balance of cholesterol-rich to local hexagonal order is proposed to control the partitioning of membrane components into the L(o) regions, which have been frequently associated with formation of so-called rafts, platforms in the plasma membranes of cells that facilitate interaction between components of signaling pathways.
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Auxiliary basis expansions for large-scale electronic structure calculations

TL;DR: The sparsity of the fit coefficients is assessed on simple hydrocarbon molecules and shows quite early onset of linear growth in the number of significant coefficients with system size using the attenuated Coulomb metric, suggesting it is possible to design linear scaling auxiliary basis methods without additional approximations to treat large systems.
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CHARMM All-Atom Additive Force Field for Sphingomyelin: Elucidation of Hydrogen Bonding and of Positive Curvature

TL;DR: The C36 CHARMM lipid force field has been extended to include sphingolipids, via a combination of high-level quantum mechanical calculations on small molecule fragments, and validation by extensive molecular dynamics simulations on N-palmitoyl and N-stearoyl sphingomyelin.