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Alfonso Muñoz-Pomer Fuentes
Researcher at European Bioinformatics Institute
Publications - 7
Citations - 1726
Alfonso Muñoz-Pomer Fuentes is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Gene expression profiling & BioPAX : Biological Pathways Exchange. The author has an hindex of 6, co-authored 7 publications receiving 1301 citations.
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Journal ArticleDOI
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
Robert Petryszak,Maria Keays,Y. Amy Tang,Nuno A. Fonseca,Elisabet Barrera,Tony Burdett,Anja Füllgrabe,Alfonso Muñoz-Pomer Fuentes,Simon Jupp,Satu Koskinen,Oliver Mannion,Laura Huerta,Karyn Megy,Catherine Snow,Eleanor Williams,Mitra Barzine,Emma Hastings,Hendrik Weisser,James C. Wright,Pankaj Jaiswal,Wolfgang Huber,Jyoti S. Choudhary,Helen Parkinson,Alvis Brazma +23 more
TL;DR: The first proteomics study in human tissues is now displayed alongside transcriptomics data in the same tissues, and novel analyses and visualisations include: ‘enrichment’ in each differential comparison of GO terms, Reactome, Plant Reactome pathways and InterPro domains.
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Open Targets: a platform for therapeutic target identification and validation.
Gautier Koscielny,Peter An,Denise Carvalho-Silva,Jennifer A. Cham,Luca Fumis,Rippa Gasparyan,Samiul Hasan,Nikiforos Karamanis,Michael Maguire,Eliseo Papa,Andrea Pierleoni,Miguel Pignatelli,Theo Platt,Francis Rowland,Priyanka Wankar,A. Patrícia Bento,Tony Burdett,Antonio Fabregat,Simon A. Forbes,Anna Gaulton,Cristina Y. González,Henning Hermjakob,Anne Hersey,S Jupe,Senay Kafkas,Maria Keays,Catherine Leroy,Francisco-Javier Lopez,María Paula Magariños,James Malone,Johanna McEntyre,Alfonso Muñoz-Pomer Fuentes,Claire O'Donovan,Irene Papatheodorou,Helen Parkinson,Barbara Palka,Justin Paschall,Robert Petryszak,Naruemon Pratanwanich,Sirarat Sarntivijal,Gary Saunders,Konstantinos Sidiropoulos,Thomas Smith,Zbyslaw Sondka,Oliver Stegle,Y. Amy Tang,Edward Turner,Brendan Vaughan,Olga Vrousgou,Xavier Watkins,Maria Jesus Martin,Philippe Sanseau,Jessica Vamathevan,Ewan Birney,Jeffrey C. Barrett,Jeffrey C. Barrett,Ian Dunham +56 more
TL;DR: The Open Targets Validation Platform is designed to support identification and prioritization of biological targets for follow-up and provides evidence about the association of known and potential drug targets with diseases.
Journal ArticleDOI
Expression Atlas update: from tissues to single cells
Irene Papatheodorou,Pablo Moreno,Jonathan R. Manning,Alfonso Muñoz-Pomer Fuentes,Nancy George,Silvie Fexova,Nuno A. Fonseca,Anja Füllgrabe,Matthew Green,Ni Huang,Ni Huang,Laura Huerta,Haider Iqbal,Monica Jianu,Suhaib Mohammed,Lingyun Zhao,Andrew F. Jarnuczak,Simon Jupp,John C. Marioni,John C. Marioni,John C. Marioni,Kerstin B. Meyer,Robert Petryszak,Cesar Augusto Prada Medina,Carlos Talavera-López,Sarah A. Teichmann,Juan Antonio Vizcaíno,Alvis Brazma +27 more
TL;DR: Expression Atlas is extended with a new added-value service to display gene expression in single cells with the increased availability of single cell RNA-Seq datasets in the public archives.
Journal ArticleDOI
Expression Atlas: gene and protein expression across multiple studies and organisms.
Irene Papatheodorou,Nuno A. Fonseca,Maria Keays,Y. Amy Tang,Elisabet Barrera,Wojciech Bazant,Melissa Burke,Anja Füllgrabe,Alfonso Muñoz-Pomer Fuentes,Nancy George,Laura Huerta,Satu Koskinen,Suhaib Mohammed,Matthew Geniza,Justin Preece,Pankaj Jaiswal,Andrew F. Jarnuczak,Wolfgang Huber,Oliver Stegle,Juan Antonio Vizcaíno,Alvis Brazma,Robert Petryszak +21 more
TL;DR: Novel features and visualizations include the on-the-fly analysis of gene set overlaps and the option to view gene co-expression in experiments investigating constitutive gene expression across tissues or other conditions.
Journal ArticleDOI
Gramene 2018: unifying comparative genomics and pathway resources for plant research.
Marcela K. Tello-Ruiz,Sushma Naithani,Joshua C. Stein,Parul Gupta,Michael S. Campbell,Andrew Olson,Sharon Wei,Justin Preece,Matthew Geniza,Yinping Jiao,Young Koung Lee,Young Koung Lee,Bo Wang,Joseph Mulvaney,Kapeel Chougule,Justin Elser,Noor Al-Bader,Sunita Kumari,James Thomason,Vivek Kumar,Dan Bolser,Guy Naamati,Electra Tapanari,Nuno A. Fonseca,Laura Huerta,Haider Iqbal,Maria Keays,Alfonso Muñoz-Pomer Fuentes,Y. Amy Tang,Antonio Fabregat,Peter D'Eustachio,Joel Weiser,Lincoln D. Stein,Robert Petryszak,Irene Papatheodorou,Paul J. Kersey,Patti Lockhart,Crispin B. Taylor,Pankaj Jaiswal,Doreen Ware,Doreen Ware +40 more
TL;DR: Gramene's Plant Reactome provides a knowledgebase of cellular-level plant pathway networks and uses curated rice reference pathways to derive pathway projections for an additional 66 species based on gene orthology, and facilitates display of gene expression, gene–gene interactions, and user-defined omics data in the context of these pathways.