Guy Naamati

TL;DR: This paper provides an update to the previous publications about the Ensembl Genomes resource, with a focus on recent developments and expansions, including the incorporation of almost 20 000 additional genome sequences and over 35 000 tracks of RNA-Seq data.

TL;DR: An overview of Ensembl Genomes is provided, with a focus on recent developments, which include the continued growth, more robust and reproducible sets of orthologues and paralogues, and enriched views of gene expression and gene function in plants.

TL;DR: The innate immune response’s transcriptional divergence between species and variability in expression among cells is characterized, suggesting that this expression pattern has evolved as a mechanism for fine-tuned regulation to achieve an effective but balanced response.

TL;DR: Gramene's Plant Reactome provides a knowledgebase of cellular-level plant pathway networks and uses curated rice reference pathways to derive pathway projections for an additional 66 species based on gene orthology, and facilitates display of gene expression, gene–gene interactions, and user-defined omics data in the context of these pathways.

TL;DR: Ensembl Genomes as discussed by the authors provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed by the Ensembl project (https://www.ensemblgenomes.org).