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Brandon J. Mannion
Researcher at Lawrence Berkeley National Laboratory
Publications - 24
Citations - 1644
Brandon J. Mannion is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Enhancer & Gene. The author has an hindex of 12, co-authored 19 publications receiving 1140 citations.
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Journal ArticleDOI
Enhancer redundancy provides phenotypic robustness in mammalian development
Marco Osterwalder,Iros Barozzi,Virginie Tissières,Virginie Tissières,Yoko Fukuda-Yuzawa,Brandon J. Mannion,Sarah Y. Afzal,Elizabeth Lee,Yiwen Zhu,Ingrid Plajzer-Frick,Catherine S. Pickle,Momoe Kato,Tyler H. Garvin,Quan T. Pham,Anne N. Harrington,Jennifer A. Akiyama,Veena Afzal,Javier Lopez-Rios,Javier Lopez-Rios,Diane E. Dickel,Axel Visel,Axel Visel,Len A. Pennacchio,Len A. Pennacchio +23 more
TL;DR: It is shown that the pervasive presence of multiple enhancers with similar activities near the same gene confers phenotypic robustness to loss-of-function mutations in individual enhancers.
Journal ArticleDOI
Progressive Loss of Function in a Limb Enhancer during Snake Evolution.
Evgeny Z. Kvon,Olga K. Kamneva,Uirá Souto Melo,Iros Barozzi,Marco Osterwalder,Brandon J. Mannion,Virginie Tissières,Catherine S. Pickle,Ingrid Plajzer-Frick,Elizabeth Lee,Momoe Kato,Tyler H. Garvin,Jennifer A. Akiyama,Veena Afzal,Javier Lopez-Rios,Edward M. Rubin,Edward M. Rubin,Diane E. Dickel,Len A. Pennacchio,Len A. Pennacchio,Axel Visel,Axel Visel,Axel Visel +22 more
TL;DR: Significant changes in a regulatory sequence associated with a major body plan transition are demonstrated and highlighted the role of enhancers in morphological evolution.
Journal ArticleDOI
An atlas of dynamic chromatin landscapes in mouse fetal development
David U. Gorkin,David U. Gorkin,Iros Barozzi,Iros Barozzi,Yuan Zhao,Yuan Zhao,Yanxiao Zhang,Hui Huang,Hui Huang,Ah Young Lee,Bin Li,Joshua Chiou,Andre Wildberg,Bo Ding,Bo Zhang,Mengchi Wang,J. Seth Strattan,Jean M. Davidson,Yunjiang Qiu,Yunjiang Qiu,Veena Afzal,Jennifer A. Akiyama,Ingrid Plajzer-Frick,Catherine S. Novak,Momoe Kato,Tyler H. Garvin,Quan T. Pham,Anne N. Harrington,Brandon J. Mannion,Elizabeth Lee,Yoko Fukuda-Yuzawa,Yupeng He,Yupeng He,Sebastian Preissl,Sebastian Preissl,Sora Chee,Jee Yun Han,Brian A. Williams,Diane Trout,Henry Amrhein,Hongbo Yang,J. Michael Cherry,Wei Wang,Kyle J. Gaulton,Joseph R. Ecker,Yin Shen,Diane E. Dickel,Axel Visel,Axel Visel,Axel Visel,Len A. Pennacchio,Len A. Pennacchio,Len A. Pennacchio,Bing Ren +53 more
TL;DR: Analysis of chromatin state and accessibility in mouse tissues from twelve sites and eight developmental stages provides the most comprehensive view of Chromatin dynamics to date.
Journal ArticleDOI
Germline Chd8 haploinsufficiency alters brain development in mouse.
Andrea Gompers,Linda Su-Feher,Jacob Ellegood,Nycole A. Copping,M. Asrafuzzaman Riyadh,Tyler W. Stradleigh,Michael C. Pride,Melanie D. Schaffler,A. Ayanna Wade,Rinaldo Catta-Preta,Iva Zdilar,Shreya Louis,Gaurav Kaushik,Brandon J. Mannion,Ingrid Plajzer-Frick,Veena Afzal,Axel Visel,Axel Visel,Axel Visel,Len A. Pennacchio,Len A. Pennacchio,Diane E. Dickel,Jason P. Lerch,Jacqueline N. Crawley,Konstantinos Zarbalis,Jill L. Silverman,Alexander Nord +26 more
TL;DR: This integrative analysis offers an initial picture of the consequences of Chd8 haploinsufficiency for brain development and identified a co-expression module with peak expression in early brain development featuring dysregulation of RNA processing, chromatin remodeling and cell-cycle genes enriched for promoter binding by ChD8.
Journal ArticleDOI
Ultraconserved Enhancers Are Required for Normal Development.
Diane E. Dickel,Athena R. Ypsilanti,Ramón Pla,Yiwen Zhu,Iros Barozzi,Brandon J. Mannion,Yupar S. Khin,Yoko Fukuda-Yuzawa,Ingrid Plajzer-Frick,Catherine S. Pickle,Elizabeth Lee,Anne N. Harrington,Quan T. Pham,Tyler H. Garvin,Momoe Kato,Marco Osterwalder,Jennifer A. Akiyama,Veena Afzal,John L.R. Rubenstein,Len A. Pennacchio,Len A. Pennacchio,Len A. Pennacchio,Axel Visel,Axel Visel,Axel Visel +24 more
TL;DR: It is shown that ultraconserved enhancers are required for normal development and indicates that remarkably strong sequence conservation likely results from fitness deficits that appear subtle in a laboratory setting.