C
Christian J. A. Sigrist
Researcher at Swiss Institute of Bioinformatics
Publications - 37
Citations - 32119
Christian J. A. Sigrist is an academic researcher from Swiss Institute of Bioinformatics. The author has contributed to research in topics: PROSITE & InterPro. The author has an hindex of 32, co-authored 34 publications receiving 25299 citations. Previous affiliations of Christian J. A. Sigrist include University of Basel & University of Geneva.
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Journal ArticleDOI
The InterPro protein families and domains database: 20 years on.
Matthias Blum,Hsin-Yu Chang,Sara Chuguransky,Tiago Grego,Swaathi Kandasaamy,Alex L. Mitchell,Gift Nuka,Typhaine Paysan-Lafosse,Matloob Qureshi,Shriya Raj,Lorna Richardson,Gustavo A. Salazar,Lowri Williams,Peer Bork,Alan Bridge,Julian Gough,Daniel H. Haft,Ivica Letunic,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Marco Necci,Christine A. Orengo,Arun Prasad Pandurangan,Catherine Rivoire,Christian J. A. Sigrist,Ian Sillitoe,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Cathy H. Wu,Alex Bateman,Robert D. Finn +32 more
TL;DR: The status of InterPro (version 81.0) in its 20th year of operation, and its associated software, is reported, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.
Journal ArticleDOI
InterPro in 2011: new developments in the family and domain prediction database
Sarah Hunter,Philip Jones,Alex L. Mitchell,Rolf Apweiler,Teresa K. Attwood,Alex Bateman,Thomas E. Bernard,David Binns,Peer Bork,Sarah W. Burge,Edouard de Castro,Penny Coggill,Matthew Corbett,Ujjwal Das,Louise C. Daugherty,Lauranne Duquenne,Robert D. Finn,Matthew Fraser,Julian Gough,Daniel H. Haft,Nicolas Hulo,Daniel Kahn,Elizabeth Kelly,Ivica Letunic,David M. Lonsdale,Rodrigo Lopez,Martin Madera,John Maslen,Craig McAnulla,Jennifer McDowall,Conor McMenamin,Huaiyu Mi,Prudence Mutowo-Muellenet,Nicola Mulder,Darren A. Natale,Christine A. Orengo,Sebastien Pesseat,Marco Punta,Antony F. Quinn,Catherine Rivoire,Amaia Sangrador-Vegas,Jeremy D. Selengut,Christian J. A. Sigrist,Maxim Scheremetjew,John Tate,Manjulapramila Thimmajanarthanan,Paul Thomas,Cathy H. Wu,Corin Yeats,Siew Yit Yong +49 more
TL;DR: An overview of new developments in the InterPro database and its associated software since 2009 is given, including updates to database content, curation processes and Web and programmatic interfaces.
Journal ArticleDOI
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
Rolf Apweiler,Teresa K. Attwood,Amos Marc Bairoch,Alex Bateman,Ewan Birney,Margaret Biswas,Philipp Bucher,Lorenzo Cerutti,Florence Corpet,Michael D. R. Croning,Richard Durbin,Laurent Falquet,Wolfgang Fleischmann,Jérôme Gouzy,Henning Hermjakob,Nicolas Hulo,Inge Jonassen,Daniel Kahn,Alexander Kanapin,Youla Karavidopoulou,Rodrigo Lopez,Beate Marx,Nicola Mulder,Tom Oinn,Marco Pagni,Florence Servant,Christian J. A. Sigrist,Evgeni M. Zdobnov +27 more
TL;DR: InterPro is an integrated documentation resource for protein families, domains and functional sites, which amalgamates the efforts of the PROSITE, PRINTS, Pfam and ProDom database projects.
Journal ArticleDOI
PROSITE, a protein domain database for functional characterization and annotation
Christian J. A. Sigrist,Lorenzo Cerutti,Edouard de Castro,Petra S. Langendijk-Genevaux,Virginie Bulliard,Amos Marc Bairoch,Nicolas Hulo +6 more
TL;DR: AMSA, an annotated multiple sequence alignment format used to build a new generation of generalized profiles, the migration of ScanProsite to Vital-IT, a cluster of 633 CPUs, and the adoption of the Distributed Annotation System (DAS) to facilitate PROSITE data integration and interchange with other sources are described.
The Universal Protein Resource (UniProt) in 2010
Rolf Apweiler,Maria Jesus Martin,Claire O'Donovan,Michele Magrane,Yasmin Alam-Faruque,Ricardo Antunes,Daniel Barrell,Benoit Bely,M Bingley,David Binns,Lynette Bower,Paul Browne,WM Chan,E. Dimmer,Ruth Y. Eberhardt,A. Fedotov,Rebecca E. Foulger,John S. Garavelli,Rachael P. Huntley,Julius O.B. Jacobsen,M. Kleen,Kati Laiho,Rasko Leinonen,Duncan Legge,Quan Lin,W Liu,Jie Luo,Sandra Orchard,Samuel Patient,Diego Poggioli,Manuela Pruess,Matthew Corbett,G di Martino,M Donnelly,P van Rensburg,Amos Marc Bairoch,Lydie Bougueleret,Ioannis Xenarios,S Altairac,Andrea H. Auchincloss,Ghislaine Argoud-Puy,Kristian B. Axelsen,Delphine Baratin,M. C. Blatter,Brigitte Boeckmann,Jerven Bolleman,L. Bollondi,Emmanuel Boutet,SB Quintaje,Lionel Breuza,Alan Bridge,E. Decastro,L Ciapina,D Coral,Elisabeth Coudert,Isabelle Cusin,G Delbard,M Doche,Dolnide Dornevil,Paula Duek Roggli,Séverine Duvaud,Anne Estreicher,L Famiglietti,M Feuermann,Sebastien Gehant,N. Farriol-Mathis,Serenella Ferro,Elisabeth Gasteiger,Alain Gateau,Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Nicolas Hulo,J. James,S. Jimenez,Florence Jungo,T. Kappler,Guillaume Keller,Corinne Lachaize,L Lane-Guermonprez,Petra S. Langendijk-Genevaux,Lara,P Lemercier,Damien Lieberherr,Tdo Lima,Mangold,Xavier D. Martin,Patrick Masson,M. Moinat,Anne Morgat,Anaïs Mottaz,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Pillet,Sylvain Poux,Monica Pozzato,Nicole Redaschi,Catherine Rivoire,Bernd Roechert,Maria Victoria Schneider,Christian J. A. Sigrist,K Sonesson,S Staehli,Eleanor J Stanley,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,A-L Veuthey,L Yip,L Zuletta,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Winona C. Barker,Chuming Chen,Yingfei Chen,Z-Z Hu,Hongzhan Huang,Raja Mazumder,Peter B. McGarvey,Darren A. Natale,Jules Nchoutmboube,Natalia V. Petrova,N Subramanian,Baris E. Suzek,U. Ugochukwu,Sona Vasudevan,C. R. Vinayaka,LS Yeh,Jian Zhang +133 more