C
Cole Trapnell
Researcher at University of Washington
Publications - 148
Citations - 101469
Cole Trapnell is an academic researcher from University of Washington. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 57, co-authored 123 publications receiving 84590 citations. Previous affiliations of Cole Trapnell include Iowa State University & Massachusetts Institute of Technology.
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Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin
TL;DR: In this paper, single cell transcriptomes of zebrafish with genetic or induced defects in pigmentation and squamation were analyzed to reveal a previously undescribed population of ameloblast-like epidermal cells, suggest hormonal control of epithelial-mesenchymal signaling, clarify the signaling network that governs scale papillae development, and identify the hypodermis as a crucial pigment cell support environment.
Posted ContentDOI
CRISPR-Cas9 Screens Reveal Genes Regulating a G0-like State in Human Neural Progenitors
Heather Feldman,Chad M. Toledo,Sonali Arora,Pia Hoellerbauer,Philip Corrin,Lucas Carter,Megan Kufeld,Hamid Bolouri,Ryan Basom,Jeffrey J. Delrow,Joshua Meier,Feng Zhang,José L. McFaline-Figueroa,Cole Trapnell,Steven M. Pollard,Christopher L. Plaisier,Patrick J. Paddison +16 more
TL;DR: The results suggest that hNPC expansion is constrained by a transient G0-like state, regulated by multiple pathways, that facilitates retention of neurodevelopmental identity.
Journal ArticleDOI
Erratum: The anatomy of successful computational biology software
Stephen F. Altschul,Barry Demchak,Richard Durbin,Robert Gentleman,Martin Krzywinski,Heng Li,Anton Nekrutenko,James T. Robinson,Wayne Rasband,James Taylor,Cole Trapnell +10 more
TL;DR: In the version of this article initially published, in Table 1, Steven Salzberg should have been listed as the second, and not the last, of the creators of the Cufflinks software.
Journal ArticleDOI
Single Cell Transcriptomics Maps the Embryonic Emergence of HSC and Identifies Intercellular Interactions Regulating HSC Genesis
Brandon Hadland,Barbara Varnum-Finney,Stacey Dozono,Dana Jackson,Shahin Rafii,Irwin D. Bernstein,Cole Trapnell +6 more
TL;DR: Combining the transcriptional profiles of emerging HSC with niche AGM-EC, candidate ligand-receptor pairs regulating intercellular interactions during HSC specification and self-renewal are identified and validated and are expected to enhance the understanding of the unique signal pathways necessary for the development of functional HSC.
Posted ContentDOI
Multipotent progenitors and hematopoietic stem cells arise independently during the endothelial to hematopoietic transition in the early mouse embryo
Tessa Dignum,Barbara Varnum-Finney,Sanjay Srivatsan,Stacey Dozono,Olivia Waltner,Adam M Heck,Cynthia Nourigat-Mckay,Dana Jackson,Shahin Rafii,Cole Trapnell,Irwin D. Bernstein,Irwin D. Bernstein,Brandon Hadland,Brandon Hadland +13 more
TL;DR: The authors showed that rare HE with functional HSC potential in the early murine embryo are distinct from more abundant HE with multilineage hematopoietic potential that fail to generate HSC.