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Cole Trapnell

Researcher at University of Washington

Publications -  148
Citations -  101469

Cole Trapnell is an academic researcher from University of Washington. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 57, co-authored 123 publications receiving 84590 citations. Previous affiliations of Cole Trapnell include Iowa State University & Massachusetts Institute of Technology.

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Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin

TL;DR: In this paper, single cell transcriptomes of zebrafish with genetic or induced defects in pigmentation and squamation were analyzed to reveal a previously undescribed population of ameloblast-like epidermal cells, suggest hormonal control of epithelial-mesenchymal signaling, clarify the signaling network that governs scale papillae development, and identify the hypodermis as a crucial pigment cell support environment.
Journal ArticleDOI

Erratum: The anatomy of successful computational biology software

TL;DR: In the version of this article initially published, in Table 1, Steven Salzberg should have been listed as the second, and not the last, of the creators of the Cufflinks software.
Journal ArticleDOI

Single Cell Transcriptomics Maps the Embryonic Emergence of HSC and Identifies Intercellular Interactions Regulating HSC Genesis

TL;DR: Combining the transcriptional profiles of emerging HSC with niche AGM-EC, candidate ligand-receptor pairs regulating intercellular interactions during HSC specification and self-renewal are identified and validated and are expected to enhance the understanding of the unique signal pathways necessary for the development of functional HSC.