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Daniel D. Ence
Researcher at University of Utah
Publications - 6
Citations - 1338
Daniel D. Ence is an academic researcher from University of Utah. The author has contributed to research in topics: Genome & Coalescent theory. The author has an hindex of 4, co-authored 4 publications receiving 1190 citations. Previous affiliations of Daniel D. Ence include Louisiana State University.
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Journal ArticleDOI
A beginner's guide to eukaryotic genome annotation
Mark Yandell,Daniel D. Ence +1 more
TL;DR: An overview of the genome annotation process and the available tools is provided and some best-practice approaches are described.
Journal ArticleDOI
Genomic signatures of evolutionary transitions from solitary to group living
Karen M. Kapheim,Karen M. Kapheim,Hailin Pan,Cai Li,Steven L. Salzberg,Steven L. Salzberg,Daniela Puiu,Tanja Magoc,Hugh M. Robertson,Matthew E. Hudson,Aarti Venkat,Aarti Venkat,Brielle J. Fischman,Brielle J. Fischman,Alvaro G. Hernandez,Mark Yandell,Daniel D. Ence,Carson Holt,George D. Yocum,William P. Kemp,Jordi Bosch,Robert M. Waterhouse,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Eckart Stolle,Eckart Stolle,F. Bernhard Kraus,Sophie Helbing,Robin F. A. Moritz,Karl M. Glastad,Brendan G. Hunt,Michael A. D. Goodisman,Frank Hauser,Cornelis J. P. Grimmelikhuijzen,Daniel Guariz Pinheiro,Daniel Guariz Pinheiro,Francis M. F. Nunes,Michelle P.M. Soares,E. D. Tanaka,Zilá Luz Paulino Simões,Klaus Hartfelder,Jay D. Evans,Seth M. Barribeau,Reed M. Johnson,Jonathan Massey,Jonathan Massey,Bruce R. Southey,Martin Hasselmann,Daniel Hamacher,Matthias Biewer,Clement F. Kent,Clement F. Kent,Amro Zayed,Charles Blatti,Saurabh Sinha,J. Spencer Johnston,Shawn J. Hanrahan,Sarah D. Kocher,Jun Wang,Gene E. Robinson,Guojie Zhang +60 more
TL;DR: There is no single road map to eusociality; independent evolutionary transitions in sociality have independent genetic underpinnings and these transitions do have similar general features, including an increase in constrained protein evolution accompanied by increases in the potential for gene regulation and decreases in diversity and abundance of transposable elements.
Journal ArticleDOI
SpedeSTEM: a rapid and accurate method for species delimitation
Daniel D. Ence,Bryan C. Carstens +1 more
TL;DR: This work enables speciation investigations to identify lineages that are evolutionarily distinct and thus have the potential to form new species before these lineages acquire secondary characteristics such as reproductive isolation or morphological differentiation that are commonly used to define species.
Journal ArticleDOI
Transposable element islands facilitate adaptation to novel environments in an invasive species
Lukas Schrader,Jay W. Kim,Daniel D. Ence,Aleksey V. Zimin,Antonia Klein,Katharina von Wyschetzki,Tobias Weichselgartner,Carsten Kemena,Johannes Stökl,Eva Schultner,Yannick Wurm,Christopher D. Smith,Mark Yandell,Jürgen Heinze,Juergen Gadau,Jan Oettler +15 more
TL;DR: In this article, two populations of an inbred ant that diverge in phenotype were sequenced to determine how variability is generated and reveal a tripartite interplay between transposable elements, life history and adaptation in an invasive species.
Journal ArticleDOI
On the correspondence between the transcriptomic response of a compound and its effects on its targets
TL;DR: In this article , a comprehensive study aimed at exploring the relationship between the induced transcriptomic response and the target of a compound is presented, which reveals how the concordance between both modalities increases by connecting pathway and target information.