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Edrisse Chermak
Researcher at King Abdullah University of Science and Technology
Publications - 14
Citations - 541
Edrisse Chermak is an academic researcher from King Abdullah University of Science and Technology. The author has contributed to research in topics: Macromolecular docking & Base pair. The author has an hindex of 12, co-authored 14 publications receiving 466 citations. Previous affiliations of Edrisse Chermak include Pierre-and-Marie-Curie University & Centre national de la recherche scientifique.
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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Marc F. Lensink,Sameer Velankar,Andriy Kryshtafovych,Shen You Huang,Dina Schneidman-Duhovny,Andrej Sali,Joan Segura,Narcis Fernandez-Fuentes,Shruthi Viswanath,Ron Elber,Sergei Grudinin,Petr Popov,Emilie Neveu,Hasup Lee,Minkyung Baek,Sangwoo Park,Lim Heo,Gyu Rie Lee,Chaok Seok,Sanbo Qin,Huan-Xiang Zhou,David W. Ritchie,Bernard Maigret,Marie-Dominique Devignes,Anisah W. Ghoorah,Mieczyslaw Torchala,Raphael A. G. Chaleil,Paul A. Bates,Efrat Ben-Zeev,Miriam Eisenstein,Surendra S. Negi,Zhiping Weng,Thom Vreven,Brian G. Pierce,Tyler M. Borrman,Jinchao Yu,Françoise Ochsenbein,Raphael Guerois,Anna Vangone,João P. G. L. M. Rodrigues,Gydo C. P. van Zundert,Mehdi Nellen,Li C. Xue,Ezgi Karaca,Adrien S. J. Melquiond,Koen M. Visscher,Panagiotis L. Kastritis,Alexandre M. J. J. Bonvin,Xianjin Xu,Liming Qiu,Chengfei Yan,Jilong Li,Zhiwei Ma,Jianlin Cheng,Xiaoqin Zou,Yang Shen,Lenna X. Peterson,Hyung Rae Kim,Amit Roy,Amit Roy,Xusi Han,Juan Esquivel-Rodríguez,Daisuke Kihara,Xiaofeng Yu,Neil J. Bruce,Jonathan C. Fuller,Rebecca C. Wade,Ivan Anishchenko,Petras J. Kundrotas,Ilya A. Vakser,Kenichiro Imai,Kazunori D. Yamada,Toshiyuki Oda,Tsukasa Nakamura,Kentaro Tomii,Chiara Pallara,Miguel Romero-Durana,Brian Jiménez-García,Iain H. Moal,Juan Fernández-Recio,Jong Young Joung,Jong Yun Kim,Keehyoung Joo,Jooyoung Lee,Jooyoung Lee,Dima Kozakov,Sandor Vajda,Scott E. Mottarella,David R. Hall,Dmitri Beglov,Artem B. Mamonov,Bing Xia,Tanggis Bohnuud,Carlos A. Del Carpio,Carlos A. Del Carpio,Eichiro Ichiishi,Nicholas A. Marze,Daisuke Kuroda,Shourya S. Roy Burman,Jeffrey J. Gray,Edrisse Chermak,Luigi Cavallo,Romina Oliva,Andrey Tovchigrechko,Shoshana J. Wodak +104 more
TL;DR: Results show that the prediction of homodimer assemblies by homology modeling techniques and docking calculations is quite successful for targets featuring large enough subunit interfaces to represent stable associations, and that docking procedures tend to perform better than standard homology modeled techniques.
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Accuracy of DLPNO-CCSD(T) method for noncovalent bond dissociation enthalpies from coinage metal cation complexes.
TL;DR: Results converge already at CC-PVTZ quality basis set, making highly accurate DLPNO-CCSD(T) estimates affordable for routine calculations (single-point) on large transition metal complexes of >100 atoms.
Journal ArticleDOI
Occurrence and stability of lone pair-π stacking interactions between ribose and nucleobases in functional RNAs.
TL;DR: It is found that lone pair–π stacking interactions also occur between ribose and aromatic amino acids in RNA–protein complexes, and some establish inter-domain or inter-molecular contacts and often implicate functionally relevant nucleotides.
Journal ArticleDOI
Troubles in the Systematic Prediction of Transition Metal Thermochemistry with Contemporary Out-of-the-Box Methods.
TL;DR: Since DFT results cannot be systematically improved and large nonsystematic deviations were obtained even for best performers, the results indicate that current DFT methods are still unable to provide robust predictions in transition metal thermochemistry, at least for the functionals explored in this work.
Journal ArticleDOI
CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts.
Edrisse Chermak,Andrea Petta,Luigi Serra,Anna Vangone,Vittorio Scarano,Luigi Cavallo,Romina Oliva +6 more
TL;DR: ConSRANK, a web tool for analyzing, comparing and ranking protein-protein and protein-nucleic acid docking models, based on the conservation of inter-residue contacts and its visualization in 2D and 3D interactive contact maps is presented.