R
Romina Oliva
Researcher at University of Naples Federico II
Publications - 72
Citations - 2998
Romina Oliva is an academic researcher from University of Naples Federico II. The author has contributed to research in topics: Base pair & Gene. The author has an hindex of 21, co-authored 66 publications receiving 2158 citations. Previous affiliations of Romina Oliva include Parthenope University of Naples & Sapienza University of Rome.
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Journal ArticleDOI
Towards the online computer-aided design of catalytic pockets
Laura Falivene,Zhen Cao,Andrea Petta,Luigi Serra,Albert Poater,Romina Oliva,Vittorio Scarano,Luigi Cavallo +7 more
TL;DR: Topographic steric maps are introduced that provide a three-dimensional image of the catalytic pocket—the region of the catalyst where the substrate binds and reacts—enabling it to be visualized and also reshaped by changing various parameters.
Journal ArticleDOI
SambVca 2. A Web Tool for Analyzing Catalytic Pockets with Topographic Steric Maps
Laura Falivene,Raffaele Credendino,Albert Poater,Andrea Petta,Luigi Serra,Romina Oliva,Vittorio Scarano,Luigi Cavallo +7 more
TL;DR: In this paper, the authors present a Web application for analyzing the catalytic pocket of metal complexes using topographic steric maps as a general and unbiased descriptor that is suitable for every class of catalysts.
Journal ArticleDOI
COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes.
TL;DR: COCOMAPS combines traditional analyses and 3D visualization of the interface with the effectiveness of intermolecular contact maps, a novel tool for analyzing, visualizing and comparing the interface in protein-protein and protein-nucleic acids complexes.
Journal ArticleDOI
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Marc F. Lensink,Sameer Velankar,Andriy Kryshtafovych,Shen You Huang,Dina Schneidman-Duhovny,Andrej Sali,Joan Segura,Narcis Fernandez-Fuentes,Shruthi Viswanath,Ron Elber,Sergei Grudinin,Petr Popov,Emilie Neveu,Hasup Lee,Minkyung Baek,Sangwoo Park,Lim Heo,Gyu Rie Lee,Chaok Seok,Sanbo Qin,Huan-Xiang Zhou,David W. Ritchie,Bernard Maigret,Marie-Dominique Devignes,Anisah W. Ghoorah,Mieczyslaw Torchala,Raphael A. G. Chaleil,Paul A. Bates,Efrat Ben-Zeev,Miriam Eisenstein,Surendra S. Negi,Zhiping Weng,Thom Vreven,Brian G. Pierce,Tyler M. Borrman,Jinchao Yu,Françoise Ochsenbein,Raphael Guerois,Anna Vangone,João P. G. L. M. Rodrigues,Gydo C. P. van Zundert,Mehdi Nellen,Li C. Xue,Ezgi Karaca,Adrien S. J. Melquiond,Koen M. Visscher,Panagiotis L. Kastritis,Alexandre M. J. J. Bonvin,Xianjin Xu,Liming Qiu,Chengfei Yan,Jilong Li,Zhiwei Ma,Jianlin Cheng,Xiaoqin Zou,Yang Shen,Lenna X. Peterson,Hyung Rae Kim,Amit Roy,Amit Roy,Xusi Han,Juan Esquivel-Rodríguez,Daisuke Kihara,Xiaofeng Yu,Neil J. Bruce,Jonathan C. Fuller,Rebecca C. Wade,Ivan Anishchenko,Petras J. Kundrotas,Ilya A. Vakser,Kenichiro Imai,Kazunori D. Yamada,Toshiyuki Oda,Tsukasa Nakamura,Kentaro Tomii,Chiara Pallara,Miguel Romero-Durana,Brian Jiménez-García,Iain H. Moal,Juan Fernández-Recio,Jong Young Joung,Jong Yun Kim,Keehyoung Joo,Jooyoung Lee,Jooyoung Lee,Dima Kozakov,Sandor Vajda,Scott E. Mottarella,David R. Hall,Dmitri Beglov,Artem B. Mamonov,Bing Xia,Tanggis Bohnuud,Carlos A. Del Carpio,Carlos A. Del Carpio,Eichiro Ichiishi,Nicholas A. Marze,Daisuke Kuroda,Shourya S. Roy Burman,Jeffrey J. Gray,Edrisse Chermak,Luigi Cavallo,Romina Oliva,Andrey Tovchigrechko,Shoshana J. Wodak +104 more
TL;DR: Results show that the prediction of homodimer assemblies by homology modeling techniques and docking calculations is quite successful for targets featuring large enough subunit interfaces to represent stable associations, and that docking procedures tend to perform better than standard homology modeled techniques.
Journal ArticleDOI
Structural and kinetic characterization of native laccases from Pleurotus ostreatus, Rigidoporus lignosus, and Trametes trogii.
Anna Maria V. Garzillo,Maria Chiara Colao,Vincenzo Buonocore,Romina Oliva,Lucia Falcigno,Michele Saviano,Anna Maria Santoro,Riccardo Zappala,Raffaele P. Bonomo,Carmelina Bianco,Paola Giardina,Gianna Palmieri,Giovanni Sannia +12 more
TL;DR: A comparative study has been performed on five native laccases purified from the three basidiomycete fungi Pleurotus ostreatus, Rigidoporus lignosus, and Trametes trogii to relate their different catalytic capacities to their structural properties.