J
Jinchao Yu
Researcher at Université Paris-Saclay
Publications - 17
Citations - 603
Jinchao Yu is an academic researcher from Université Paris-Saclay. The author has contributed to research in topics: Macromolecular docking & Docking (molecular). The author has an hindex of 11, co-authored 15 publications receiving 462 citations. Previous affiliations of Jinchao Yu include University of Paris-Sud & Commissariat à l'énergie atomique et aux énergies alternatives.
Papers
More filters
Journal ArticleDOI
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Marc F. Lensink,Sameer Velankar,Andriy Kryshtafovych,Shen You Huang,Dina Schneidman-Duhovny,Andrej Sali,Joan Segura,Narcis Fernandez-Fuentes,Shruthi Viswanath,Ron Elber,Sergei Grudinin,Petr Popov,Emilie Neveu,Hasup Lee,Minkyung Baek,Sangwoo Park,Lim Heo,Gyu Rie Lee,Chaok Seok,Sanbo Qin,Huan-Xiang Zhou,David W. Ritchie,Bernard Maigret,Marie-Dominique Devignes,Anisah W. Ghoorah,Mieczyslaw Torchala,Raphael A. G. Chaleil,Paul A. Bates,Efrat Ben-Zeev,Miriam Eisenstein,Surendra S. Negi,Zhiping Weng,Thom Vreven,Brian G. Pierce,Tyler M. Borrman,Jinchao Yu,Françoise Ochsenbein,Raphael Guerois,Anna Vangone,João P. G. L. M. Rodrigues,Gydo C. P. van Zundert,Mehdi Nellen,Li C. Xue,Ezgi Karaca,Adrien S. J. Melquiond,Koen M. Visscher,Panagiotis L. Kastritis,Alexandre M. J. J. Bonvin,Xianjin Xu,Liming Qiu,Chengfei Yan,Jilong Li,Zhiwei Ma,Jianlin Cheng,Xiaoqin Zou,Yang Shen,Lenna X. Peterson,Hyung Rae Kim,Amit Roy,Amit Roy,Xusi Han,Juan Esquivel-Rodríguez,Daisuke Kihara,Xiaofeng Yu,Neil J. Bruce,Jonathan C. Fuller,Rebecca C. Wade,Ivan Anishchenko,Petras J. Kundrotas,Ilya A. Vakser,Kenichiro Imai,Kazunori D. Yamada,Toshiyuki Oda,Tsukasa Nakamura,Kentaro Tomii,Chiara Pallara,Miguel Romero-Durana,Brian Jiménez-García,Iain H. Moal,Juan Fernández-Recio,Jong Young Joung,Jong Yun Kim,Keehyoung Joo,Jooyoung Lee,Jooyoung Lee,Dima Kozakov,Sandor Vajda,Scott E. Mottarella,David R. Hall,Dmitri Beglov,Artem B. Mamonov,Bing Xia,Tanggis Bohnuud,Carlos A. Del Carpio,Carlos A. Del Carpio,Eichiro Ichiishi,Nicholas A. Marze,Daisuke Kuroda,Shourya S. Roy Burman,Jeffrey J. Gray,Edrisse Chermak,Luigi Cavallo,Romina Oliva,Andrey Tovchigrechko,Shoshana J. Wodak +104 more
TL;DR: Results show that the prediction of homodimer assemblies by homology modeling techniques and docking calculations is quite successful for targets featuring large enough subunit interfaces to represent stable associations, and that docking procedures tend to perform better than standard homology modeled techniques.
Journal ArticleDOI
XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining.
Clément Nemoz,Virginie Ropars,Philippe Frit,Amandine Gontier,Pascal Drevet,Jinchao Yu,Raphael Guerois,Aurelien Pitois,Audrey Comte,Christine Delteil,Nadia Barboule,Pierre Legrand,Sonia Baconnais,Yandong Yin,Satish K. Tadi,Emeline Barbet-Massin,Imre Berger,Eric Le Cam,Mauro Modesti,Eli Rothenberg,Patrick Calsou,Jean-Baptiste Charbonnier +21 more
TL;DR: The Ku70-Ku80 (Ku) heterodimer binds rapidly and tightly to the ends of DNA double-strand breaks and recruits factors of the non-homologous end-joining (NHEJ) repair pathway through molecular interactions that remain unclear.
Journal ArticleDOI
InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information.
TL;DR: In 91% of all complexes tested in the benchmark, at least one residue out of the 10 predicted is involved in the interface, providing useful guidelines for mutagenesis, making InterEvDock a unique and efficient tool to explore structural interactomes under an evolutionary perspective.
Journal ArticleDOI
Next-generation drug repurposing using human genetics and network biology.
TL;DR: Progress and perspectives in combining human genetics, especially genome-wide association studies, with network biology to drive drug repurposing for rare and common diseases with monogenic or polygenic etiologies are reviewed.
Journal ArticleDOI
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs
TL;DR: The InterEvDock2 pipeline was benchmarked on 812 complexes for which unbound homology models of the two partners and co-evolutionary information are available in the PPI4DOCK database and identified a correct model among the top 10 consensus in 29% of cases and at least one correct interface residue among 10 predicted in 91% of these cases.