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Eileen Dalin
Researcher at Joint Genome Institute
Publications - 32
Citations - 3280
Eileen Dalin is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 20, co-authored 32 publications receiving 3028 citations. Previous affiliations of Eileen Dalin include United States Department of Energy & Lawrence Berkeley National Laboratory.
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Journal ArticleDOI
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Dongying Wu,Dongying Wu,Philip Hugenholtz,Konstantinos Mavromatis,Rüdiger Pukall,Eileen Dalin,Natalia Ivanova,Victor Kunin,Lynne Goodwin,Martin Wu,Brian J. Tindall,Sean D. Hooper,Amrita Pati,Athanasios Lykidis,Stefan Spring,Iain Anderson,Patrik D'haeseleer,Patrik D'haeseleer,Adam Zemla,Mitchell Singer,Alla Lapidus,Matt Nolan,Alex Copeland,Cliff Han,Feng Chen,Jan Fang Cheng,Susan Lucas,Cheryl A. Kerfeld,Elke Lang,Sabine Gronow,Patrick S. G. Chain,Patrick S. G. Chain,David Bruce,Edward M. Rubin,Nikos C. Kyrpides,Hans-Peter Klenk,Jonathan A. Eisen,Jonathan A. Eisen +37 more
TL;DR: The results strongly support the need for systematic ‘phylogenomic’ efforts to compile a phylogeny-driven ‘Genomic Encyclopedia of Bacteria and Archaea’ in order to derive maximum knowledge from existing microbial genome data as well as from genome sequences to come.
Journal ArticleDOI
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
Hector Garcia Martin,Natalia Ivanova,Victor Kunin,Falk Warnecke,Kerrie Barry,Alice C. McHardy,Christine Yeates,Shaomei He,Asaf Salamov,Ernest Szeto,Eileen Dalin,Nik Putnam,Harris Shapiro,Jasmyn Pangilinan,Isidore Rigoutsos,Nikos C. Kyrpides,Linda L. Blackall,Katherine D. McMahon,Philip Hugenholtz +18 more
TL;DR: A metagenomic analysis of two lab-scale EBPR sludges dominated by the uncultured bacterium, “Candidatus Accumulibacter phosphatis,” sheds light on several controversies in EBPR metabolic models and provides hypotheses explaining the dominance of A. phosphatis.
Journal ArticleDOI
The DNA sequence and biology of human chromosome 19
Jane Grimwood,Laurie Gordon,Laurie Gordon,Anne S. Olsen,Anne S. Olsen,Astrid Terry,Jeremy Schmutz,Jane Lamerdin,Jane Lamerdin,Uffe Hellsten,David Goodstein,Olivier Couronne,Mary Bao Tran-Gyamfi,Mary Bao Tran-Gyamfi,Andrea Aerts,Michael R. Altherr,Michael R. Altherr,Linda K. Ashworth,Linda K. Ashworth,Eva Bajorek,Stacey Black,Elbert Branscomb,Elbert Branscomb,Sean Caenepeel,Anthony V. Carrano,Anthony V. Carrano,Chenier Caoile,Yee Man Chan,Mari Christensen,Mari Christensen,Catherine A. Cleland,Catherine A. Cleland,Alex Copeland,Eileen Dalin,Paramvir S. Dehal,Mirian Denys,John C. Detter,Julio Escobar,Dave Flowers,Dea Fotopulos,Carmen Rosa Albacete García,Anca M. Georgescu,Anca M. Georgescu,Tijana Glavina,Maria Gomez,Eidelyn Gonzales,Matthew Groza,Matthew Groza,Nancy Hammon,Trevor Hawkins,Lauren Haydu,Isaac Ho,Wayne Huang,Sanjay Israni,Jamie Jett,Kristen Kadner,Heather Kimball,Arthur Kobayashi,Arthur Kobayashi,Vladimer Larionov,Sun-Hee Leem,Frederick Lopez,Yunian Lou,Steve Lowry,Stephanie Malfatti,Stephanie Malfatti,Diego Martinez,Paula McCready,Paula McCready,Catherine Medina,Jenna Morgan,Kathryn Nelson,Kathryn Nelson,Matt Nolan,Ivan Ovcharenko,Ivan Ovcharenko,Sam Pitluck,Martin Pollard,Anthony P. Popkie,Paul Predki,Glenda Quan,Glenda Quan,Lucía Ramírez,Sam Rash,James Retterer,Alex Rodriguez,Stephanine Rogers,Asaf Salamov,Angelica Salazar,Xinwei She,Doug Smith,Tom Slezak,Tom Slezak,Victor V. Solovyev,Nina Thayer,Nina Thayer,Hope Tice,Ming Tsai,Anna Ustaszewska,Nu Vo,Mark C. Wagner,Mark C. Wagner,Jeremy Wheeler,Kevin Wu,Gary Xie,Gary Xie,Joan Yang,Inna Dubchak,Terrence S. Furey,Pieter J. deJong,Mark Dickson,David Gordon,Evan E. Eichler,Len A. Pennacchio,Paul G. Richardson,Lisa Stubbs,Lisa Stubbs,Daniel S. Rokhsar,Richard M. Myers,Edward M. Rubin,Susan Lucas +120 more
TL;DR: Comparative analyses show a fascinating picture of conservation and divergence, revealing large blocks of gene orthology with rodents, scattered regions with more recent gene family expansions and deletions, and segments of coding and non-coding conservation with the distant fish species Takifugu.
Journal ArticleDOI
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.
Steven A. Frese,Andrew K. Benson,Gerald W. Tannock,Diane M. Loach,Jaehyoung Kim,Min Zhang,Phaik Lyn Oh,Nicholas C. K. Heng,Prabhu B. Patil,Nathalie Juge,Donald A. MacKenzie,Bruce M. Pearson,Alla Lapidus,Eileen Dalin,Hope Tice,Eugene Goltsman,Miriam Land,Loren Hauser,Natalia Ivanova,Nikos C. Kyrpides,Jens Walter +20 more
TL;DR: Experimental evidence is provided and a molecular basis for the evolution of host specificity in a vertebrate gut symbiont is identified, and it identified genomic events that have shaped this process.
Journal ArticleDOI
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum
Richard Sucgang,Alan Kuo,Xiangjun Tian,William J Salerno,Anup Parikh,Christa L. Feasley,Eileen Dalin,Hank Tu,Eryong Huang,Kerrie Barry,Erika Lindquist,Harris Shapiro,David G Bruce,Jeremy Schmutz,Asaf Salamov,Petra Fey,Pascale Gaudet,Christophe Anjard,M. Madan Babu,S. Basu,Yulia A. Bushmanova,Hanke van der Wel,Mariko Katoh-Kurasawa,Christopher Dinh,Pedro M. Coutinho,Tamao Saito,Marek Eliáš,Pauline Schaap,Robert R. Kay,Bernard Henrissat,Ludwig Eichinger,Francisco Rivero,Nicholas H. Putnam,Christopher M. West,William F. Loomis,Rex L. Chisholm,Gad Shaulsky,Gad Shaulsky,Joan E. Strassmann,David C. Queller,Adam Kuspa,Adam Kuspa,Igor V. Grigoriev +42 more
TL;DR: Genes involved in the social stage evolved more rapidly than others, consistent with either relaxed selection or accelerated evolution due to social conflict, and shed light on the biology and evolution of the Dictyostelia.