Fernando Meyer

TL;DR: The Critical Assessment of Metagenome Interpretation (CAMI) challenge has engaged the global developer community to benchmark their programs on highly complex and realistic data sets, generated from ∼700 newly sequenced microorganisms and ∼600 novel viruses and plasmids and representing common experimental setups as discussed by the authors.

TL;DR: Assessment of Metagenome BinnERs (AMBER) is an evaluation package for the comparative assessment of genome reconstructions from metagenome benchmark datasets and calculates the performance metrics and comparative visualizations used in the first benchmarking challenge of the initiative for the Critical Assessment ofmetagenome Interpretation (CAMI).

TL;DR: The Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, including those of the first challenge of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI), together with convenient visualizations.

TL;DR: The incorporation of a new chaining approach in the search of RNA sequence-structure patterns enables the description of molecules folding into complex secondary structures with multiple ordered patterns, and the presented method's sublinear expected running time makes it well suited for RNA sequence -structure pattern matching in large sequence databases.

TL;DR: Structator as mentioned in this paper is a software solution for index-based search of RNA sequence-structure patterns, which is based on affix arrays, a recently introduced index data structure, preprocessed from the target database.