K
Karla E. Hirokawa
Researcher at Allen Institute for Brain Science
Publications - 29
Citations - 6615
Karla E. Hirokawa is an academic researcher from Allen Institute for Brain Science. The author has contributed to research in topics: Connectome & Biology. The author has an hindex of 18, co-authored 27 publications receiving 4020 citations.
Papers
More filters
Journal ArticleDOI
Morphological diversity of single neurons in molecularly defined cell types
Hanchuan Peng,Hanchuan Peng,Peng Xie,Lijuan Liu,Xiuli Kuang,Yimin Wang,Yimin Wang,Lei Qu,Lei Qu,Hui Gong,Shengdian Jiang,Anan Li,Zongcai Ruan,Liya Ding,Zizhen Yao,Chao Chen,Mengya Chen,Tanya L. Daigle,Rachel A. Dalley,Zhangcan Ding,Yanjun Duan,Aaron Feiner,Ping He,Chris Hill,Karla E. Hirokawa,Guodong Hong,Lei Huang,Sara Kebede,Hsien-Chi Kuo,Rachael Larsen,Phil Lesnar,Longfei Li,Qi Li,Xiangning Li,Yaoyao Li,Yuanyuan Li,An Liu,Donghuan Lu,Stephanie Mok,Lydia Ng,Thuc Nghi Nguyen,Qiang Ouyang,Jintao Pan,Elise Shen,Yuanyuan Song,Susan M. Sunkin,Bosiljka Tasic,Matthew B. Veldman,Wayne Wakeman,Wan Wan,Peng Wang,Quanxin Wang,Tao Wang,Yaping Wang,Feng Xiong,Wei Xiong,Wenjie Xu,Min Ye,Lulu Yin,Yang Yu,Jia Yuan,Jing Yuan,Zhixi Yun,Shaoqun Zeng,Shichen Zhang,Sujun Zhao,Zijun Zhao,Zhi Zhou,Z. Josh Huang,Z. Josh Huang,Luke Esposito,Michael Hawrylycz,Staci A. Sorensen,X. William Yang,Yefeng Zheng,Zhongze Gu,Wei Xie,Christof Koch,Qingming Luo,Qingming Luo,Julie A. Harris,Yun Wang,Hongkui Zeng +82 more
TL;DR: In this paper, the authors systematically examined complete single-neuron morphologies on a brain-wide scale, established a pipeline encompassing sparse labeling, whole-brain imaging, reconstruction, registration and analysis, and identified 11 major projection neuron types with distinct morphological features and corresponding transcriptomic identities.
Journal ArticleDOI
Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network
Jennifer D. Whitesell,Adam Liska,Ludovico Coletta,Ludovico Coletta,Karla E. Hirokawa,Phillip Bohn,Ali Williford,Peter A. Groblewski,Nile Graddis,Leonard Kuan,Joseph E. Knox,Anh Ho,Wayne Wakeman,Philip R. Nicovich,Thuc Nghi Nguyen,Cindy T. J. van Velthoven,Emma Garren,Olivia Fong,Maitham Naeemi,Alex M. Henry,Nick Dee,Kimberly A. Smith,Boaz P. Levi,David Feng,Lydia Ng,Bosiljka Tasic,Hongkui Zeng,Stefan Mihalas,Alessandro Gozzi,Julie A. Harris +29 more
TL;DR: It is found that the mouse DMN consists of preferentially interconnected cortical regions, and two L5 projection types differentiated by in- or out-DMN targets, laminar position, and gene expression are identified.
Posted ContentDOI
Cellular Anatomy of the Mouse Primary Motor Cortex
Rodrigo Muñoz-Castañeda,Brian Zingg,Katherine Matho,Quanxin Wang,Xiaoyin Chen,Nicholas N. Foster,Arun Narasimhan,Anan Li,Karla E. Hirokawa,Bing-Xing Huo,Samik Bannerjee,Laura Korobkova,Chris Sin Park,Young Gyun Park,Michael S. Bienkowski,Uree Chon,Diek W. Wheeler,Xiangning Li,Yun Wang,Kathleen Kelly,Xu An,Sarojini M. Attili,Ian Bowman,Anastasiia Bludova,Ali Cetin,Liya Ding,Rhonda Drewes,Florence D’Orazi,Corey Elowsky,Stephan Fischer,William Galbavy,Lei Gao,Jesse Gillis,Peter A. Groblewski,Lin Gou,Joel D. Hahn,Joshua T. Hatfield,Houri Hintiryan,Jason Huang,Hideki Kondo,Xiuli Kuang,Philip Lesnar,Xu Li,Yaoyao Li,Meng Kuan Lin,Lijuan Liu,Darrick Lo,Judith Mizrachi,Stephanie Mok,Maitham Naeemi,Philip R. Nicovich,Ramesh Palaniswamy,Jason Palmer,Xiaoli Qi,Elise Shen,Yu-Chi Sun,Huizhong Tao,Wayne Wakemen,Yimin Wang,Yimin Wang,Peng Xie,Shenqin Yao,Jin Yuan,Muye Zhu,Lydia Ng,Li I. Zhang,Byung Kook Lim,Michael Hawrylycz,Hui Gong,James C. Gee,Yongsoo Kim,Hanchuan Peng,Kwanghun Chuang,X. William Yang,Qingming Luo,Partha P. Mitra,Anthony M. Zador,Hongkui Zeng,Giorgio A. Ascoli,Z. Josh Huang,Z. Josh Huang,Pavel Osten,Julie A. Harris,Hong-Wei Dong +83 more
TL;DR: This work derives a comprehensive cell type-based description of one brain structure - the primary motor cortex upper limb area (MOp-ul) of the mouse - and provides a roadmap towards a cellular resolution description of mammalian brain architecture.
Journal ArticleDOI
Cellular anatomy of the mouse primary motor cortex
Rodrigo Muñoz-Castañeda,Brian Zingg,Brian Zingg,Katherine Matho,Xiaoyin Chen,Xiaoyin Chen,Quanxin Wang,Nicholas N. Foster,Nicholas N. Foster,Anan Li,Arun Narasimhan,Karla E. Hirokawa,Bing-Xing Huo,Samik Bannerjee,Laura Korobkova,Chris Sin Park,Young Gyun Park,Michael S. Bienkowski,Uree Chon,Diek W. Wheeler,Xiangning Li,Yun Wang,Maitham Naeemi,Peng Xie,Lijuan Liu,Kathleen Kelly,Xu An,Xu An,Sarojini M. Attili,Ian Bowman,Ian Bowman,Anastasiia Bludova,Ali Cetin,Liya Ding,Rhonda Drewes,Florence D’Orazi,Corey Elowsky,Stephan Fischer,William Galbavy,Lei Gao,Lei Gao,Jesse Gillis,Peter A. Groblewski,Lin Gou,Lin Gou,Joel D. Hahn,Joshua T. Hatfield,Joshua T. Hatfield,Houri Hintiryan,Houri Hintiryan,Junxiang Jason Huang,Hideki Kondo,Xiuli Kuang,Philip Lesnar,Xu Li,Yaoyao Li,Meng Kuan Lin,Darrick Lo,Darrick Lo,Judith Mizrachi,Stephanie Mok,Philip R. Nicovich,Ramesh Palaniswamy,Jason Palmer,Xiaoli Qi,Elise Shen,Yu-Chi Sun,Huizhong W. Tao,Wayne Wakemen,Yimin Wang,Yimin Wang,Shenqin Yao,Jing Yuan,Huiqing Zhan,Muye Zhu,Muye Zhu,Lydia Ng,Li I. Zhang,Byung Kook Lim,Byung Kook Lim,Michael Hawrylycz,Hui Gong,James C. Gee,Yongsoo Kim,Kwanghun Chung,X. William Yang,Hanchuan Peng,Qingming Luo,Partha P. Mitra,Anthony M. Zador,Hongkui Zeng,Giorgio A. Ascoli,Z. Josh Huang,Z. Josh Huang,Pavel Osten,Julie A. Harris,Hong-Wei Dong,Hong-Wei Dong +97 more
TL;DR: In this article, the authors derived a comprehensive cell type-based anatomical description of one exemplar brain structure, the mouse primary motor cortex, upper limb area (MOp-ul), using genetic and viral labelling, barcoded anatomy resolved by sequencing, single-neuron reconstruction, whole-brain imaging and cloud-based neuroinformatics tools.
Journal ArticleDOI
Whole brain imaging reveals distinct spatial patterns of amyloid beta deposition in three mouse models of Alzheimer's disease.
Jennifer D. Whitesell,Alex R. Buckley,Joseph E. Knox,Leonard Kuan,Nile Graddis,Andrew Pelos,Andrew Pelos,Alice Mukora,Wayne Wakeman,Phillip Bohn,Anh Ho,Karla E. Hirokawa,Julie A. Harris +12 more
TL;DR: How whole brain imaging of amyloid pathology in mice reveals the extent to which a given model recapitulates the regional Aβ deposition patterns described in AD is shown is shown.