K
Katharine Best
Researcher at Los Alamos National Laboratory
Publications - 25
Citations - 1425
Katharine Best is an academic researcher from Los Alamos National Laboratory. The author has contributed to research in topics: T-cell receptor & Zika virus. The author has an hindex of 14, co-authored 23 publications receiving 1141 citations. Previous affiliations of Katharine Best include Merck & Co. & Weizmann Institute of Science.
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Journal ArticleDOI
Zika viral dynamics and shedding in rhesus and cynomolgus macaques.
Christa E. Osuna,So-Yon Lim,Claire Deleage,Bryan D. Griffin,Derek R. Stein,Lukas T. Schroeder,Robert W Omange,Katharine Best,Ma Luo,Peter T. Hraber,Hanne Andersen-Elyard,Erwing Fabian Cardozo Ojeda,Scott Huang,Dana L. Vanlandingham,Stephen Higgs,Alan S. Perelson,Jacob D. Estes,David Safronetz,Mark G. Lewis,James B. Whitney,James B. Whitney +20 more
TL;DR: It is shown that both rhesus and cynomolgus macaques are highly susceptible to infection by lineages of Zika virus that are closely related to, or are currently circulating in, the Americas.
Journal ArticleDOI
T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity
Asaf Madi,Eric Shifrut,Shlomit Reich-Zeliger,Hilah Gal,Katharine Best,Wilfred Ndifon,Benjamin M. Chain,Irun R. Cohen,Nir Friedman +8 more
TL;DR: It is suggested that biases and convergence in TCR recombination combine with ongoing selection to generate a restricted subset of self-associated, public CDR3 TCR sequences, and invite reexamination of the basic mechanisms of T-cell repertoire formation.
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Zika Virus Persistence in the Central Nervous System and Lymph Nodes of Rhesus Monkeys.
Malika Aid,Peter Abbink,Rafael A. Larocca,Michael R. Boyd,Ramya Nityanandam,Ovini Nanayakkara,Amanda J. Martinot,Edward T. Moseley,Eryn Blass,Erica N. Borducchi,Abishek Chandrashekar,Amanda L. Brinkman,Katherine Molloy,David Jetton,Lawrence J. Tartaglia,Jinyan Liu,Katharine Best,Alan S. Perelson,Rafael De La Barrera,Mark G. Lewis,Dan H. Barouch,Dan H. Barouch +21 more
TL;DR: It is shown that ZikV can persist in cerebrospinal fluid (CSF) and lymph nodes of infected rhesus monkeys for weeks after virus has been cleared from peripheral blood, urine, and mucosal secretions, raising the possibility that persistent or occult neurologic and lymphoid disease may occur following clearance of peripheral virus in ZIKV-infected individuals.
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Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence
Niclas Thomas,Katharine Best,Mattia Cinelli,Shlomit Reich-Zeliger,Hilah Gal,Eric Shifrut,Asaf Madi,Nir Friedman,John Shawe-Taylor,Benny Chain +9 more
TL;DR: The results reinforce the remarkable diversity of the TcR repertoire, resulting in many diverse private TcRs contributing to the T-cell response even in genetically identical mice responding to the same antigen.
Journal ArticleDOI
Quantitative Characterization of the T Cell Receptor Repertoire of Naïve and Memory Subsets Using an Integrated Experimental and Computational Pipeline Which Is Robust, Economical, and Versatile.
Theres Oakes,James M. Heather,Katharine Best,Rachel Byng-Maddick,Connor Husovsky,Mazlina Ismail,Kroopa Joshi,Gavin Maxwell,Mahdad Noursadeghi,Natalie E. Riddell,Tabea Ruehl,Carolin T. Turner,Imran Uddin,Benny Chain +13 more
TL;DR: In this article, a protocol for amplifying, sequencing and analysing TCRs is described, which is robust, sensitive and versatile, and is applied to the analysis of human memory and naive subpopulations, and results in consistent measures of diversity and inequality.