M
Martin Mokrejs
Researcher at Charles University in Prague
Publications - 13
Citations - 3567
Martin Mokrejs is an academic researcher from Charles University in Prague. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 9, co-authored 12 publications receiving 3458 citations. Previous affiliations of Martin Mokrejs include Max Planck Society & Academy of Sciences of the Czech Republic.
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Journal ArticleDOI
MIPS: a database for genomes and protein sequences
Hans-Werner Mewes,Dmitrij Frishman,Ulrich Güldener,Gertrud Mannhaupt,Klaus F. X. Mayer,Martin Mokrejs,Burkhard Morgenstern,Martin Münsterkötter,Stephen Rudd,B. Weil +9 more
TL;DR: This report describes the systematic and up-to-date analysis of genomes (PEDANT), a comprehensive database of the yeast genome (MYGD), a database reflecting the progress in sequencing the Arabidopsis thaliana genome (MATD), the database of assembled, annotated human EST clusters (MEST), and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume).
Journal ArticleDOI
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
Andreas Ruepp,Alfred Zollner,Dieter Maier,Kaj Albermann,Jean Hani,Martin Mokrejs,Igor V. Tetko,Ulrich Güldener,Gertrud Mannhaupt,Martin Münsterkötter,H. Werner Mewes +10 more
TL;DR: The Functional Catalogue (FunCat), a hierarchically structured, organism-independent, flexible and scalable controlled classification system enabling the functional description of proteins from any organism, is presented.
Journal ArticleDOI
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Diego Martinez,Diego Martinez,Jean F. Challacombe,Ingo Morgenstern,David S. Hibbett,Monika Schmoll,Christian P. Kubicek,Patricia Ferreira,Francisco J. Ruiz-Dueñas,Ángel T. Martínez,Phil Kersten,Kenneth E. Hammel,Amber Vanden Wymelenberg,Jill Gaskell,Erika Lindquist,Grzegorz Sabat,Sandra Splinter BonDurant,Luis F. Larrondo,Paulo Canessa,Rafael Vicuña,Jagjit S. Yadav,Harshavardhan Doddapaneni,Venkataramanan Subramanian,Antonio G. Pisabarro,José Luis Lavín,José A. Oguiza,Emma R. Master,Bernard Henrissat,Pedro M. Coutinho,Paul Harris,Jon K. Magnuson,Scott E. Baker,Kenneth S. Bruno,William Kenealy,Patrik J. Hoegger,Ursula Kües,Preethi Ramaiya,Susan Lucas,Asaf Salamov,Harris Shapiro,Hank Tu,Christine L. Chee,Monica Misra,Gary Xie,Sarah Teter,Debbie Yaver,Timothy Y. James,Martin Mokrejs,Martin Pospíšek,Igor V. Grigoriev,Thomas Brettin,Daniel S. Rokhsar,Randy M. Berka,Dan Cullen +53 more
TL;DR: Comparisons with the closely relatedwhite-rot fungus Phanerochaete chrysosporium support an evolutionary shift from white-rot to brown-rot during which the capacity for efficient depolymerization of lignin was lost.
Journal ArticleDOI
The PEDANT genome database
Dmitrij Frishman,Martin Mokrejs,Denis Kosykh,Gabi Kastenmüller,Grigory Kolesov,Igor Z. Zubrzycki,Christian Gruber,Birgitta Geier,Andreas Kaps,Kaj Albermann,Andreas Volz,Christian Wagner,Matthias Fellenberg,Klaus Heumann,Hans-Werner Mewes +14 more
TL;DR: The current status of the PEDANT database and novel analytical features added to the P EDANT server in 2002 are described, including integration with the BioRS data retrieval system which allows fast text queries and a comprehensive set of tools for genome comparison.
Journal ArticleDOI
IRESite—a tool for the examination of viral and cellular internal ribosome entry sites
TL;DR: This work presents a newly implemented tool for displaying RNA secondary structures and for searching through the structures currently stored in the database, and presents an updated list of reported IRESs.