T
Timothy Y. James
Researcher at University of Michigan
Publications - 180
Citations - 23528
Timothy Y. James is an academic researcher from University of Michigan. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 53, co-authored 162 publications receiving 20152 citations. Previous affiliations of Timothy Y. James include McMaster University & Swedish University of Agricultural Sciences.
Papers
More filters
Journal ArticleDOI
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch,Keith A. Seifert,Sabine M. Huhndorf,Vincent Robert,John L. Spouge,C. André Lévesque,Wen Chen,Elena Bolchacova,Kerstin Voigt,Pedro W. Crous,Andrew N. Miller,Michael J. Wingfield,M. Catherine Aime,Kwang Deuk An,Feng-Yan Bai,Robert W. Barreto,Dominik Begerow,Marie Josée Bergeron,Meredith Blackwell,Teun Boekhout,Teun Boekhout,Mesfin Bogale,Nattawut Boonyuen,Ana Rosa Burgaz,Bart Buyck,Lei Cai,Qing Cai,Gianluigi Cardinali,Priscila Chaverri,Brian J. Coppins,Ana Crespo,Paloma Cubas,Craig Cummings,Ulrike Damm,Z. Wilhelm de Beer,G. Sybren de Hoog,Ruth Del-Prado,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Javier Diéguez-Uribeondo,Pradeep K. Divakar,Brian Douglas,Margarita Dueñas,Tuan A. Duong,Ursula Eberhardt,Joan E. Edwards,Mostafa S. Elshahed,Katerina Fliegerova,Manohar R. Furtado,Miguel A. García,Zai-Wei Ge,Gareth W. Griffith,K. Griffiths,Johannes Z. Groenewald,Marizeth Groenewald,Martin Grube,Marieka Gryzenhout,Liang-Dong Guo,Ferry Hagen,Sarah Hambleton,Richard C. Hamelin,Karen Hansen,Paul Harrold,Gregory Heller,Cesar S. Herrera,Kazuyuki Hirayama,Yuuri Hirooka,Hsiao Man Ho,Kerstin Hoffmann,Valérie Hofstetter,Filip Högnabba,Peter M. Hollingsworth,Seung-Beom Hong,Kentaro Hosaka,Jos Houbraken,Karen W. Hughes,Seppo Huhtinen,Kevin D. Hyde,Kevin D. Hyde,Timothy Y. James,Eric M. Johnson,Joan E. Johnson,Peter R. Johnston,E. B. Gareth Jones,Laura J. Kelly,Laura J. Kelly,Paul M. Kirk,Dániel G. Knapp,Urmas Kõljalg,Gábor M. Kovács,Cletus P. Kurtzman,Sara Landvik,Steven D. Leavitt,Audra S. Liggenstoffer,Kare Liimatainen,Lorenzo Lombard,J. Jennifer Luangsa-ard,H. Thorsten Lumbsch,Harinad Maganti,Sajeewa S. N. Maharachchikumbura,María P. Martín,Tom W. May,Alistair R. McTaggart,Andrew S. Methven,Wiel Meyer,Jean-Marc Moncalvo,Suchada Mongkolsamrit,László Nagy,R. Henrik Nilsson,Tuula Niskanen,Ildikó Nyilasi,Gen Okada,Izumi Okane,Ibai Olariaga,Jürgen Otte,Tamás Papp,Duckchul Park,Tamás Petkovits,Raquel Pino-Bodas,W. Quaedvlieg,Huzefa A. Raja,Dirk Redecker,Tara L. Rintoul,Constantino Ruibal,Jullie M. Sarmiento-Ramírez,Imke Schmitt,Imke Schmitt,Arthur Schüßler,Carol A. Shearer,Kozue Sotome,Franck O.P. Stefani,Soili Stenroos,B. Stielow,Herbert Stockinger,Satinee Suetrong,Sung-Oui Suh,Gi-Ho Sung,Motofumi Suzuki,Kazuaki Tanaka,Leho Tedersoo,M. Teresa Telleria,Eric D. Tretter,Wendy A. Untereiner,Hector Urbina,Csaba Vágvölgyi,Agathe Vialle,Thuy Duong Vu,Grit Walther,Qi Ming Wang,Yan Wang,Bevan S. Weir,Michael Weiß,Merlin M. White,Jianping Xu,Rebecca Yahr,Zhu L. Yang,Andrey Yurkov,Juan Carlos Zamora,Ning Zhang,Wen Ying Zhuang,David Schindel +160 more
TL;DR: Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation.
Journal ArticleDOI
A higher-level phylogenetic classification of the Fungi
David S. Hibbett,Manfred Binder,Joseph F. Bischoff,Meredith Blackwell,Paul F. Cannon,Ove E. Eriksson,Sabine M. Huhndorf,Timothy Y. James,Paul M. Kirk,Robert Lücking,H. Thorsten Lumbsch,François Lutzoni,P. Brandon Matheny,David J. McLaughlin,Martha J. Powell,Scott A. Redhead,Conrad L. Schoch,Joseph W. Spatafora,Joost A. Stalpers,Rytas Vilgalys,M. Catherine Aime,André Aptroot,Robert Bauer,Dominik Begerow,Gerald L. Benny,Lisa A. Castlebury,Pedro W. Crous,Yu-Cheng Dai,Walter Gams,David M. Geiser,Gareth W. Griffith,Cécile Gueidan,David L. Hawksworth,Geir Hestmark,Kentaro Hosaka,Richard A. Humber,Kevin D. Hyde,Joseph E. Ironside,Urmas Kõljalg,Cletus P. Kurtzman,Karl-Henrik Larsson,Robert W. Lichtwardt,Joyce E. Longcore,Jolanta Miadlikowska,Andrew N. Miller,Jean-Marc Moncalvo,Sharon E. Mozley-Standridge,Franz Oberwinkler,Erast Parmasto,Valérie Reeb,Jack D. Rogers,Claude Roux,Leif Ryvarden,José Paulo Sampaio,Arthur Schüssler,Junta Sugiyama,R. Greg Thorn,Leif Tibell,Wendy A. Untereiner,Christopher Walker,Zheng Wang,Alex Weir,Michael Weiss,Merlin M. White,Katarina Winka,Yi-Jian Yao,Ning Zhang +66 more
TL;DR: A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community.
Journal ArticleDOI
Reconstructing the early evolution of Fungi using a six-gene phylogeny
Timothy Y. James,Frank Kauff,Conrad L. Schoch,P. Brandon Matheny,Valérie Hofstetter,Cymon J. Cox,Cymon J. Cox,Gail Celio,Cécile Gueidan,Emily Fraker,Jolanta Miadlikowska,H. Thorsten Lumbsch,Alexandra Rauhut,Valérie Reeb,A. Elizabeth Arnold,A. Elizabeth Arnold,Anja Amtoft,Jason E. Stajich,Kentaro Hosaka,Kentaro Hosaka,Gi-Ho Sung,Desiree Johnson,Ben O'Rourke,Michael Crockett,Manfred Binder,Judd M. Curtis,Jason C. Slot,Zheng Wang,Zheng Wang,Andrew W. Wilson,Arthur Schüßler,Joyce E. Longcore,Kerry O'Donnell,Sharon E. Mozley-Standridge,David Porter,Peter M. Letcher,Martha J. Powell,John W. Taylor,Merlin M. White,Gareth W. Griffith,David R. Davies,Richard A. Humber,Joseph B. Morton,Junta Sugiyama,Amy Y. Rossman,Jack D. Rogers,Donald H. Pfister,David Hewitt,Karen Hansen,Sarah Hambleton,R. A. Shoemaker,Jan Kohlmeyer,Brigitte Volkmann-Kohlmeyer,Robert A. Spotts,Maryna Serdani,Pedro W. Crous,Karen W. Hughes,Kenji Matsuura,Ewald Langer,Gitta Langer,Wendy A. Untereiner,Robert Lücking,Burkhard Büdel,David M. Geiser,André Aptroot,Paul Diederich,Imke Schmitt,Imke Schmitt,Matthias Schultz,Rebecca Yahr,Rebecca Yahr,David S. Hibbett,François Lutzoni,David J. McLaughlin,Joseph W. Spatafora,Rytas Vilgalys +75 more
TL;DR: It is indicated that there may have been at least four independent losses of the flagellum in the kingdom Fungi, and the enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree.
Journal ArticleDOI
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
Sina M. Adl,Alastair G. B. Simpson,Mark A. Farmer,Robert A. Andersen,O. Roger Anderson,John R. Barta,Samuel S. Bowser,Guy Brugerolle,Robert A. Fensome,Suzanne Fredericq,Timothy Y. James,Sergei Karpov,Paul Kugrens,J. C. Krug,Christopher E. Lane,Louise A. Lewis,Jean Lodge,Denis H. Lynn,David G. Mann,Richard M. McCourt,Leonel Mendoza,Øjvind Moestrup,Sharon E. Mozley-Standridge,Thomas A. Nerad,Carol A. Shearer,Alexey V. Smirnov,Frederick W. Spiegel,“Max” F. J. R. Taylor +27 more
TL;DR: This revision of the classification of unicellular eukaryotes updates that of Levine et al. (1980) for the protozoa and expands it to include other protists, and proposes a scheme that is based on nameless ranked systematics.
Journal ArticleDOI
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
Joseph W. Spatafora,Ying Chang,Gerald L. Benny,Katy Lazarus,Matthew E. Smith,Mary L. Berbee,Gregory Bonito,Nicolas Corradi,Igor V. Grigoriev,Andrii P. Gryganskyi,Timothy Y. James,Kerry O'Donnell,Robert W. Roberson,Thomas N. Taylor,Jessie K. Uehling,Rytas Vilgalys,Merlin M. White,Jason E. Stajich +17 more
TL;DR: It is demonstrated that zygomycetes comprise two major clades that form a paraphyletic grade, and the phyla Mucoromycota and ZoopagomyCota are circumscribed.