L
Luis F. Larrondo
Researcher at Pontifical Catholic University of Chile
Publications - 91
Citations - 8826
Luis F. Larrondo is an academic researcher from Pontifical Catholic University of Chile. The author has contributed to research in topics: Gene & Circadian clock. The author has an hindex of 30, co-authored 79 publications receiving 7669 citations. Previous affiliations of Luis F. Larrondo include Millennium Science Initiative & Millennium Institute.
Papers
More filters
Journal ArticleDOI
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
Matthew T. Weirauch,Matthew T. Weirauch,Ally Yang,Mihai Albu,Atina G. Cote,Alejandro Montenegro-Montero,Philipp Drewe,Hamed S. Najafabadi,Samuel A. Lambert,Ishminder Mann,Kate B. Cook,Hong Zheng,Alejandra Goity,Harm van Bakel,Harm van Bakel,Jean Claude Lozano,Mary Galli,Mathew G. Lewsey,Eryong Huang,Tuhin Mukherjee,Xiaoting Chen,John S. Reece-Hoyes,Sridhar Govindarajan,Gad Shaulsky,Albertha J.M. Walhout,François-Yves Bouget,Gunnar Rätsch,Luis F. Larrondo,Joseph R. Ecker,Timothy P. Hughes +29 more
TL;DR: DNA sequence preferences for >1,000 TFs encompassing 54 different DBD classes from 131 diverse eukaryotes are determined, finding that closely related DBDs almost always have very similar DNA sequence preferences, enabling inference of motifs for ∼34% of the ∼170,000 known or predicted eUKaryotic TFs.
Journal ArticleDOI
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas,Manfred Binder,Robert Riley,Kerrie Barry,Robert A. Blanchette,Bernard Henrissat,Ángel T. Martínez,Robert Otillar,Joseph W. Spatafora,Jagjit S. Yadav,Andrea Aerts,Isabelle Benoit,Alexander Boyd,Alexis Carlson,Alex Copeland,Pedro M. Coutinho,Ronald P. de Vries,Patricia Ferreira,Keisha Findley,Brian Foster,Jill Gaskell,Dylan Glotzer,Paweł Górecki,Joseph Heitman,Cedar N. Hesse,Chiaki Hori,Kiyohiko Igarashi,Joel A. Jurgens,Nathan M Kallen,Phil Kersten,Annegret Kohler,Ursula Kües,T. K. Arun Kumar,Alan Kuo,Kurt LaButti,Luis F. Larrondo,Erika Lindquist,Albee Y. Ling,Vincent Lombard,Susan Lucas,Taina Lundell,Rachael Martin,David J. McLaughlin,Ingo Morgenstern,Emanuelle Morin,Claude Murat,László Nagy,Matthew J Nolan,Robin A. Ohm,Aleksandrina Patyshakuliyeva,Antonis Rokas,Francisco J. Ruiz-Dueñas,Grzegorz Sabat,Asaf Salamov,Masahiro Samejima,Jeremy Schmutz,Jason C. Slot,Franz J. St John,Jan Stenlid,Hui Sun,Sheng Sun,Khajamohiddin Syed,Adrian Tsang,Ad Wiebenga,Darcy Young,Antonio G. Pisabarro,Daniel C. Eastwood,Francis Martin,Dan Cullen,Igor V. Grigoriev,David S. Hibbett +70 more
TL;DR: Comparative analyses of 31 fungal genomes suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species.
Journal ArticleDOI
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Diego Martinez,Diego Martinez,Randy M. Berka,Bernard Henrissat,Markku Saloheimo,Mikko Arvas,Scott E. Baker,Jarod Chapman,Olga Chertkov,Pedro M. Coutinho,Dan Cullen,Etienne Danchin,Igor V. Grigoriev,Paul Harris,Melissa Jackson,Christian P. Kubicek,Cliff Han,Isaac Ho,Luis F. Larrondo,Alfredo Lopez de Leon,Jon K. Magnuson,Sandy Merino,Monica Misra,Beth Nelson,Nicholas H. Putnam,Barbara Robbertse,Asaf Salamov,Monika Schmoll,Astrid Terry,Nina Thayer,Ann Westerholm-Parvinen,Conrad L. Schoch,Jian Yao,Ravi D. Barabote,Mary Anne Nelson,Chris Detter,David Bruce,Cheryl R. Kuske,Gary Xie,Paul G. Richardson,Daniel S. Rokhsar,Susan Lucas,Edward M. Rubin,Nigel Dunn-Coleman,Michael Ward,Thomas Brettin +45 more
TL;DR: This work assembled 89 scaffolds to generate 34 Mbp of nearly contiguous T. reesei genome sequence comprising 9,129 predicted gene models, providing a roadmap for constructing enhanced T.Reesei strains for industrial applications such as biofuel production.
Journal ArticleDOI
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
Diego Martinez,Luis F. Larrondo,Nik Putnam,Nik Putnam,Maarten D. Sollewijn Gelpke,Katherine H. Huang,Jarrod Chapman,Jarrod Chapman,Kevin G. Helfenbein,Preethi Ramaiya,J. Chris Detter,Frank W. Larimer,Pedro M. Coutinho,Bernard Henrissat,Randy M. Berka,Dan Cullen,Daniel S. Rokhsar +16 more
TL;DR: The sequenced genome of Phanerochaete chrysosporium strain RP78 reveals an impressive array of genes encoding secreted oxidases, peroxidases and hydrolytic enzymes that cooperate in wood decay, and provides a framework for further development of bioprocesses for biomass utilization, organopollutant degradation and fiber bleaching.
Journal ArticleDOI
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
Diego Martinez,Diego Martinez,Jean F. Challacombe,Ingo Morgenstern,David S. Hibbett,Monika Schmoll,Christian P. Kubicek,Patricia Ferreira,Francisco J. Ruiz-Dueñas,Ángel T. Martínez,Phil Kersten,Kenneth E. Hammel,Amber Vanden Wymelenberg,Jill Gaskell,Erika Lindquist,Grzegorz Sabat,Sandra Splinter BonDurant,Luis F. Larrondo,Paulo Canessa,Rafael Vicuña,Jagjit S. Yadav,Harshavardhan Doddapaneni,Venkataramanan Subramanian,Antonio G. Pisabarro,José Luis Lavín,José A. Oguiza,Emma R. Master,Bernard Henrissat,Pedro M. Coutinho,Paul Harris,Jon K. Magnuson,Scott E. Baker,Kenneth S. Bruno,William Kenealy,Patrik J. Hoegger,Ursula Kües,Preethi Ramaiya,Susan Lucas,Asaf Salamov,Harris Shapiro,Hank Tu,Christine L. Chee,Monica Misra,Gary Xie,Sarah Teter,Debbie Yaver,Timothy Y. James,Martin Mokrejs,Martin Pospíšek,Igor V. Grigoriev,Thomas Brettin,Daniel S. Rokhsar,Randy M. Berka,Dan Cullen +53 more
TL;DR: Comparisons with the closely relatedwhite-rot fungus Phanerochaete chrysosporium support an evolutionary shift from white-rot to brown-rot during which the capacity for efficient depolymerization of lignin was lost.