O
Oksana Lukjancenko
Researcher at Technical University of Denmark
Publications - 40
Citations - 2559
Oksana Lukjancenko is an academic researcher from Technical University of Denmark. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 18, co-authored 39 publications receiving 1884 citations.
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Journal ArticleDOI
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Rene S. Hendriksen,Patrick Munk,Patrick Murigu Kamau Njage,Bram A. D. van Bunnik,Luke McNally,Oksana Lukjancenko,Timo Röder,David F. Nieuwenhuijse,Susanne Karlsmose Pedersen,Jette Kjeldgaard,Rolf Sommer Kaas,Philip Thomas Lanken Conradsen Clausen,Josef Korbinian Vogt,Pimlapas Leekitcharoenphon,Milou G.M. van de Schans,T. Zuidema,Ana Maria de Roda Husman,Simon Rasmussen,Bent O. Petersen,Clara Amid,Guy Cochrane,Thomas Sicheritz-Pontén,Heike Schmitt,Jorge Raul Matheu Alvarez,Awa Aidara-Kane,Sünje Johanna Pamp,Ole Lund,Tine Hald,Mark E. J. Woolhouse,Marion Koopmans,Håkan Vigre,Thomas Nordahl Petersen,Frank Møller Aarestrup +32 more
TL;DR: It is suggested that global AMR gene diversity and abundance vary by region, and that improving sanitation and health could potentially limit the global burden of AMR.
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Comparison of 61 Sequenced Escherichia Coli Genomes
TL;DR: The diversity within the species E. coli, and the overlap in gene content between this and related species, suggests a continuum rather than sharp species borders in this group of Enterobacteriaceae.
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Benchmarking of Methods for Genomic Taxonomy
Mette Voldby Larsen,Salvatore Cosentino,Oksana Lukjancenko,Dhany Saputra,Simon Rasmussen,Henrik Hasman,Thomas Sicheritz-Pontén,Frank Møller Aarestrup,David W. Ussery,David W. Ussery,Ole Lund +10 more
TL;DR: Five methods for whole-genome sequence-based prokaryotic species identification on a common data set of complete genomes are trained and benchmarked and the KmerFinder method had the overall highest accuracy.
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Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition.
Berith Elkær Knudsen,Lasse Bergmark,Patrick Munk,Oksana Lukjancenko,Anders Priemé,Frank Møller Aarestrup,Sünje Johanna Pamp +6 more
TL;DR: An improved DNA isolation procedure optimized for microbiome genomics is designed that can be used for the three examined specimen types and potentially also for other biological specimens, and designed to increase the extraction of DNA from Gram-positive bacteria.
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Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart.
Anne Holch,Kristen M. Webb,Oksana Lukjancenko,David W. Ussery,Benjamin M. Rosenthal,Lone Gram +5 more
TL;DR: The remarkable similarity between the two L. monocytogenes strains indicates that subtypes with specific traits are selected for in the food processing environment and that particular genetic and physiological factors are responsible for the persistent phenotype.