S
Sasithorn Chotewutmontri
Researcher at German Cancer Research Center
Publications - 9
Citations - 716
Sasithorn Chotewutmontri is an academic researcher from German Cancer Research Center. The author has contributed to research in topics: Deep sequencing & Whole genome sequencing. The author has an hindex of 8, co-authored 9 publications receiving 594 citations.
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Journal ArticleDOI
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
Tyler Alioto,Ivo Buchhalter,Sophia Derdak,Barbara Hutter,Matthew D. Eldridge,Eivind Hovig,Lawrence E. Heisler,Timothy Beck,Jared T. Simpson,Laurie Tonon,Anne Sophie Sertier,Ann-Marie Patch,Ann-Marie Patch,Natalie Jäger,Natalie Jäger,Philip Ginsbach,Ruben M. Drews,Nagarajan Paramasivam,Rolf Kabbe,Sasithorn Chotewutmontri,Nicolle Diessl,Christopher Previti,Sabine Schmidt,Benedikt Brors,Lars Feuerbach,Michael Heinold,Susanne Gröbner,Andrey Korshunov,Patrick S. Tarpey,Adam Butler,Jonathan Hinton,David T. Jones,Andrew Menzies,Keiran Raine,Rebecca Shepherd,Lucy Stebbings,Jon W. Teague,Paolo Ribeca,Francesc Castro Giner,Sergi Beltran,Emanuele Raineri,Marc Dabad,Simon Heath,Marta Gut,Robert E. Denroche,Nicholas J. Harding,Takafumi N. Yamaguchi,Akihiro Fujimoto,Hidewaki Nakagawa,Víctor Quesada,Rafael Valdés-Mas,Sigve Nakken,Daniel Vodak,Lawrence Bower,Andy G. Lynch,Charlotte Anderson,Charlotte Anderson,Nicola Waddell,Nicola Waddell,John V. Pearson,John V. Pearson,Sean M. Grimmond,Sean M. Grimmond,Myron Peto,Paul T. Spellman,Minghui He,Cyriac Kandoth,Semin Lee,John Zhang,John Zhang,Louis Letourneau,Singer Ma,Sahil Seth,David Torrents,Liu Xi,David A. Wheeler,Carlos López-Otín,Elias Campo,Peter J. Campbell,Paul C. Boutros,Xose S. Puente,Daniela S. Gerhard,Stefan M. Pfister,Stefan M. Pfister,John Douglas Mcpherson,John Douglas Mcpherson,Thomas J. Hudson,Thomas J. Hudson,Matthias Schlesner,Peter Lichter,Roland Eils,Roland Eils,David T. W. Jones,Ivo Gut +93 more
TL;DR: It is shown that using PCR-free methods and increasing sequencing depth to ∼100 × shows benefits, as long as the tumour:control coverage ratio remains balanced, and many issues are in fact easy to remedy and have an immediate positive impact on mutation detection accuracy.
Journal ArticleDOI
Next-generation personalised medicine for high-risk paediatric cancer patients – The INFORM pilot study
Barbara C. Worst,Barbara C. Worst,Cornelis M. van Tilburg,Gnana Prakash Balasubramanian,Petra Fiesel,Petra Fiesel,Ruth Witt,Angelika Freitag,Miream Boudalil,Miream Boudalil,Christopher Previti,Stephan Wolf,Sabine Schmidt,Sasithorn Chotewutmontri,Melanie Bewerunge-Hudler,Matthias Schick,Matthias Schlesner,Barbara Hutter,Lenka A. Taylor,Tobias Borst,Christian Sutter,Claus R. Bartram,Till Milde,Till Milde,Elke Pfaff,Elke Pfaff,Andreas E. Kulozik,Arend von Stackelberg,Roland Meisel,Arndt Borkhardt,Dirk Reinhardt,Jan-Henning Klusmann,Gudrun Fleischhack,Stephan Tippelt,Uta Dirksen,Heribert Jürgens,Christof M. Kramm,André O. von Bueren,Frank Westermann,Matthias Fischer,Matthias Fischer,Birgit Burkhardt,Wilhelm Wößmann,Michaela Nathrath,Stefan S. Bielack,Michael C. Frühwald,Simone Fulda,Thomas Klingebiel,Ewa Koscielniak,Matthias Schwab,Matthias Schwab,Roman Tremmel,Roman Tremmel,Pablo Hernáiz Driever,Johannes H. Schulte,Benedikt Brors,Andreas von Deimling,Andreas von Deimling,Peter Lichter,Angelika Eggert,David Capper,David Capper,Stefan M. Pfister,Stefan M. Pfister,David T.W. Jones,Olaf Witt,Olaf Witt +66 more
TL;DR: This study demonstrates the feasibility of comprehensive, real-time molecular profiling for high-risk paediatric cancer patients and expands upon previous personalised oncology endeavors, and presents a model with considerable interest and practical relevance in the burgeoning era of personalised medicine.
Journal ArticleDOI
Multiplex Identification of Human Papillomavirus 16 DNA Integration Sites in Cervical Carcinomas.
Bo Xu,Sasithorn Chotewutmontri,Stephan Wolf,Ursula Klos,Martina Schmitz,Matthias Dürst,Elisabeth Schwarz +6 more
TL;DR: A novel multiplex strategy for sequence determination of HPV16 DNA integration sites worked very efficiently and will open new avenues for comprehensive mapping of HPV integration sites and for the possible use of HPV Integration sites as individualized biomarkers after cancer treatment of patients for the early diagnosis of residual and recurrent disease.
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Loss of function of PGAP1 as a cause of severe encephalopathy identified by Whole Exome Sequencing: Lessons of the bioinformatics pipeline.
Martin Granzow,Nagarajan Paramasivam,Katrin Hinderhofer,Christine Fischer,Sasithorn Chotewutmontri,Lilian T. Kaufmann,Christina Evers,Urania Kotzaeridou,K. Rohrschneider,Matthias Schlesner,Marc Sturm,Stefan Pinkert,Roland Eils,Claus R. Bartram,Peter Bauer,Ute Moog +15 more
TL;DR: The present report not only illustrates the possible influence of specific filtering settings on the results of WES but also confirms PGAP1 as a cause of severe encephalopathy.
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Retrotransposon Alu is enriched in the epichromatin of HL-60 cells
TL;DR: Comparisons with available epigenetic databases suggested that epichromatin is neither “classical” heterochromatin nor highly expressing genes, implying another function at the surface of interphase chromatin.