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Scott Gradia
Researcher at Thomas Jefferson University
Publications - 10
Citations - 2370
Scott Gradia is an academic researcher from Thomas Jefferson University. The author has contributed to research in topics: MutS-1 & DNA. The author has an hindex of 9, co-authored 9 publications receiving 2074 citations.
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Journal ArticleDOI
hMSH2 forms specific mispair-binding complexes with hMSH3 and hMSH6
Samir Acharya,Teresa Wilson,Scott Gradia,Michael F. Kane,Shawn Guerrette,Gerald T. Marsischky,Richard D. Kolodner,Richard Fishel +7 more
TL;DR: Analysis of the mismatched nucleotide-binding specificity of the hMSH2-hMSH3 and hMSh2-HMSH6 protein complexes showed that they have overlapping but not identical binding specificity, which helps to explain the distribution of mutations in different mismatch-repair genes seen in hereditary nonpolyposis colon cancer.
Journal ArticleDOI
hMSH2-hMSH6 forms a hydrolysis-independent sliding clamp on mismatched DNA
Scott Gradia,Deepa Subramanian,Teresa Wilson,Samir Acharya,Alexander M. Makhov,Jack D. Griffith,Richard Fishel +6 more
TL;DR: The results support a model for bidirectional mismatch repair in which stochastic loading of multiple ATP-bound hMSH2-hMSH6 sliding clamps onto mismatch-containing DNA leads to activation of the repair machinery and/or other signaling effectors similar to G protein switches.
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DNA Repair Profiling Reveals Nonrandom Outcomes at Cas9-Mediated Breaks
Megan van Overbeek,Daniel Capurso,Matthew Merrill Carter,Matthew S. Thompson,Elizabeth Frias,Carsten Russ,John S. Reece-Hoyes,Christopher D. Nye,Scott Gradia,Bastien Vidal,Jiashun Zheng,Gregory R. Hoffman,Chris R. Fuller,Andrew May +13 more
TL;DR: This work demonstrates that the pattern of DNA repair following Cas9 cutting at each site is nonrandom and consistent across experimental replicates, cell lines, and reagent delivery methods, and elucidates a strategy for using "error-prone" DNA-repair machinery to generate precise edits.
Journal ArticleDOI
The Human Mismatch Recognition Complex hMSH2-hMSH6 Functions as a Novel Molecular Switch
TL;DR: It is shown that adenine nucleotide binding and hydrolysis by the human mismatch recognition complex hMSH2-hMSH6 functions as a novel molecular switch, suggesting a new model for the function of MutS proteins during mismatch repair in which the switch determines the timing of downstream events.
Journal ArticleDOI
Mapping the genomic landscape of CRISPR–Cas9 cleavage
Cameron Peter Sean,Chris R. Fuller,Paul Daniel Donohoue,Brittnee N. Jones,Matthew S. Thompson,Matthew Merrill Carter,Scott Gradia,Bastien Vidal,Elizabeth Garner,Euan M. Slorach,Elaine Lau,Lynda M. Banh,Alexandra M. Lied,Leslie S. Edwards,Alexander H. Settle,Daniel Capurso,Victor Llaca,Stéphane Deschamps,A. Mark Cigan,Joshua K. Young,Andrew May +20 more
TL;DR: This work developed a biochemical method (SITE-Seq), using Cas9 programmed with single-guide RNAs (sgRNAs), to identify the sequence of cut sites within genomic DNA, and found that the number of sites identified depended on sgRNA sequence and nuclease concentration.