S
Shigeki Nakagome
Researcher at Trinity College, Dublin
Publications - 44
Citations - 1329
Shigeki Nakagome is an academic researcher from Trinity College, Dublin. The author has contributed to research in topics: Population & Approximate Bayesian computation. The author has an hindex of 16, co-authored 43 publications receiving 1035 citations. Previous affiliations of Shigeki Nakagome include Kanazawa University & University of Illinois at Chicago.
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Journal ArticleDOI
Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers
Heba S. Said,Wataru Suda,Shigeki Nakagome,Hiroshi Chinen,Kenshiro Oshima,Sangwan Kim,Ryosuke Kimura,Atsushi Iraha,Hajime Ishida,Jiro Fujita,Shuhei Mano,Hidetoshi Morita,Taeko Dohi,Hiroki Oota,Masahira Hattori +14 more
TL;DR: Dysbiotic of salivary microbiota is associated with inflammatory responses in IBD patients, suggesting that it is possibly linked to dysbiosis of their gut microbiota.
Journal ArticleDOI
The prehistoric peopling of Southeast Asia.
Hugh McColl,Fernando Racimo,Lasse Vinner,Fabrice Demeter,Takashi Gakuhari,Takashi Gakuhari,J. Víctor Moreno-Mayar,George van Driem,George van Driem,Uffe Gram Wilken,Andaine Seguin-Orlando,Andaine Seguin-Orlando,Constanza de la Fuente Castro,Sally Wasef,Rasmi Shoocongdej,Viengkeo Souksavatdy,Thongsa Sayavongkhamdy,Mokhtar Saidin,Morten E. Allentoft,Takehiro Sato,Anna-Sapfo Malaspinas,Farhang Aghakhanian,Thorfinn Sand Korneliussen,Ana Prohaska,Ashot Margaryan,Ashot Margaryan,Peter de Barros Damgaard,Supannee Kaewsutthi,Patcharee Lertrit,Thi Mai Huong Nguyen,Hsiao-chun Hung,Thi Minh Tran,Huu Nghia Truong,Giang Hai Nguyen,Shaiful Shahidan,Ketut Wiradnyana,Hiromi Matsumae,Nobuo Shigehara,Minoru Yoneda,Hajime Ishida,Tadayuki Masuyama,Yasuhiro Yamada,Atsushi Tajima,Hiroki Shibata,Atsushi Toyoda,Tsunehiko Hanihara,Shigeki Nakagome,Thibaut Devièse,Anne-Marie Bacon,Philippe Duringer,Jean Luc Ponche,Laura L. Shackelford,Elise Patole-Edoumba,Anh Nguyen,Bérénice Bellina-Pryce,Jean Christophe Galipaud,Rebecca Kinaston,Rebecca Kinaston,Hallie R. Buckley,Christophe Pottier,Silas Anselm Rasmussen,Thomas Higham,Robert Foley,Marta Mirazón Lahr,Ludovic Orlando,Ludovic Orlando,Martin Sikora,Maude E. Phipps,Hiroki Oota,Charles Higham,Charles Higham,David M. Lambert,Eske Willerslev,Eske Willerslev,Eske Willerslev +74 more
TL;DR: Neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam.
Journal ArticleDOI
A time transect of exomes from a Native American population before and after European contact.
John Lindo,Emilia Huerta-Sanchez,Shigeki Nakagome,Morten Arendt Rasmussen,Barbara Petzelt,Joycelynn Mitchell,Jerome S. Cybulski,Eske Willerslev,Eske Willerslev,Eske Willerslev,Michael DeGiorgio,Ripan S. Malhi +11 more
TL;DR: The population collapse after European contact is modeled, inferring a 57% reduction in effective population size and signatures of positive selection on immune-related genes in the ancient but not the modern group are identified, with the strongest signal deriving from the human leucocyte antigen (HLA) gene HLA-DQA1.
Journal ArticleDOI
Kernel approximate Bayesian computation in population genetic inferences.
TL;DR: Fukumizu et al. as mentioned in this paper proposed a kernel-based approximate Bayesian computation (ABC) method for population genetic inference, which incorporates a large number of summary statistics while maintaining high performance of the inference.
Journal ArticleDOI
Genetics of Schizophrenia: Ready to Translate?
TL;DR: An overview of how recent approaches in schizophrenia genetics are converging is provided and how they could impact on diagnostics, the development of personalized medicine, and drug discovery is considered.