T
Timothy B. Stockwell
Researcher at J. Craig Venter Institute
Publications - 83
Citations - 22387
Timothy B. Stockwell is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Influenza A virus & Virus. The author has an hindex of 38, co-authored 83 publications receiving 21103 citations. Previous affiliations of Timothy B. Stockwell include Celera Corporation.
Papers
More filters
Journal ArticleDOI
Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.
Jeffrey S. Hall,Joshua L. TeSlaa,Sean W. Nashold,Rebecca A. Halpin,Timothy B. Stockwell,David E. Wentworth,Vivien G. Dugan,Hon S. Ip +7 more
TL;DR: Gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza, as well as document virus intercontinental movement.
Journal ArticleDOI
Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa.
Martin M. Nyaga,Khuzwayo C. Jere,Khuzwayo C. Jere,Mathew D. Esona,Mapaseka L. Seheri,Karla M. Stucker,Rebecca A. Halpin,Asmik Akopov,Timothy B. Stockwell,Ina Peenze,A.G. Diop,Kader Ndiaye,Angeline Boula,Gugu Maphalala,Chipo Berejena,Jason M. Mwenda,A. Duncan Steele,A. Duncan Steele,David E. Wentworth,M. Jeffrey Mphahlele +19 more
TL;DR: W Whole-genome sequence analyses of mixed RVA strains underscore the considerable diversity of rotavirus sequences and genome segment combinations that result from a complex evolutionary history involving multiple host species.
Journal ArticleDOI
Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens.
Odile Loreille,Shashikala Ratnayake,Adam L. Bazinet,Timothy B. Stockwell,Daniel D. Sommer,Nadin Rohland,Swapan Mallick,Philip L. F. Johnson,Pontus Skoglund,Anthony J. Onorato,Nicholas H. Bergman,David Reich,Jodi A. Irwin +12 more
TL;DR: The biological sexing of a ~4000-year-old Egyptian mummy is described using shotgun sequencing and two established methods of biological sex determination (RX and RY), by way of mitochondrial genome analysis as a means of sequence data authentication.
Journal ArticleDOI
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Kelvin Li,Anushka Brownley,Timothy B. Stockwell,Karen Beeson,Tina C McIntosh,Dana A. Busam,Steve Ferriera,Sean D. Murphy,Samuel Levy +8 more
TL;DR: A fully integrated computational PCR primer design pipeline is developed that plays a key role in the authors' high-throughput directed sequencing pipeline and novel and accurate computational methods capable of identifying primers that may lead to PCR failures are discovered.
Journal ArticleDOI
Standardized metadata for human pathogen/vector genomic sequences.
Vivien G. Dugan,Vivien G. Dugan,Scott J. Emrich,Gloria I. Giraldo-Calderón,Omar S. Harb,Ruchi M. Newman,Brett E. Pickett,Lynn M. Schriml,Timothy B. Stockwell,Christian J. Stoeckert,Daniel E. Sullivan,Indresh Singh,Doyle V. Ward,Alison Yao,Jie Zheng,Tanya Barrett,Bruce W. Birren,Lauren M. Brinkac,Vincent M. Bruno,Elizabet Caler,Sinéad B. Chapman,Frank H. Collins,Christina A. Cuomo,Valentina Di Francesco,Scott Durkin,Mark Eppinger,Michael Feldgarden,Claire M. Fraser,W. Florian Fricke,Maria Y. Giovanni,Matthew R. Henn,Erin Hine,Julie C. Dunning Hotopp,Ilene Karsch-Mizrachi,Jessica C. Kissinger,Eun Mi Lee,Punam Mathur,Emmanuel F. Mongodin,Cheryl I. Murphy,Garry S. A. Myers,Daniel E. Neafsey,Karen E. Nelson,William C. Nierman,Julia Puzak,David A. Rasko,David S. Roos,Lisa Sadzewicz,Joana C. Silva,Bruno W. S. Sobral,R. Burke Squires,Rick Stevens,Luke J. Tallon,Hervé Tettelin,David E. Wentworth,Owen White,Rebecca Will,Jennifer R. Wortman,Yun Zhang,Richard H. Scheuermann,Richard H. Scheuermann +59 more
TL;DR: The use of this metadata standard by all ongoing and future GSCID sequencing projects will provide a consistent representation of these data in the BRC resources and other repositories that leverage these data, allowing investigators to identify relevant genomic sequences and perform comparative genomics analyses that are both statistically meaningful and biologically relevant.